RNA id: XM_026948154.2


Basic Information

Item Value
RNA id XM_026948154.2
length 4462
RNA type mRNA
GC content 0.40
exon number 2
gene id zbtb25
representative False

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 18618477 ~ 18625852 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATCAGTCCAGGTTAACCGACTTTCATgacaaaaaaTGAGTGTATTAAGATCCAGCCCACTGACATCCAGCCCGATGTCTTCAGCTACCTGTTGCACATCATGTACACAGGCAACGGCCCCAAGCAGCCTGTGGATCAGGGTCGGTTACAGGACGGGATCAAGTTCCTCCATGCGTACCAGCTGTGCCGCAAAGCAACCGACGGTGGAACTGACACCTCCTCAGACTCCATCCGCATATCCAACCTGTACGGCATCCAGATCTCTTCCCAGCTGGGCACTAAAGAGTCGACAGGCATGAAAGCTAGCGGGGCACGAGAACCCGAGGACAGGCGATGTGGCTCGCGTGGCCGTCCGCTGCCAGCTTTAGCAGGGATTGAAGGGCACACATCGGAGCGCCAGTCCCTCAGTCTGCGCGCCATCACGTCAGGGGACGAGTGTGACATCTTGGCACGGATCaagcaggaagaggaggagccgGATGAGGGTGAGGAACCACGAGCGCCTGCGTCTCTGCCTTCGACCCAGGGGAGCCCATGCCAGGCTGGTGGTTTTAAGGACGGCCCTCTGGCGCTGCTGTGTCCTCAGTGTGGAGAACGATGCCTCTCTCCTGAGGGACTACAGGAACATCTTTTCACCCACGCGGCATGCGCCCTCATGGAAGGACCTTCCGAAGACAGCAGGGGGGACATTAAAGGGCCAGCGGAAGAGCGACAGTGCCACGCACTAGCAGATGAGTTGGCGTCAGAGATAAGGCGAGGTACGGCAGGCACTGGAAGTCCACCTGCAGGCTTTACACGGAAAAGAAAGATGGCATGCGCAGTCTGCAACTTGCGCTTTTCACAGAAGAGCCAGCTGCAGGAGCACATGTTCGCCCACGTGGGCAAACCACTGCGCCAACATCGTTACGGGCGATTCAGTGGACCGCTGATCCATCCCAGCGAGGGAACGTCGGAAATCGAGGAAGTTGCCCAGGATAATGGCAGCTCGTGCTACTCGCTGGACTCAGAAGTCTCTCATGAGAGCGTAGACGCCGTGGCGGTAGAATGACACCTTCAGTAACATATCGGACATGTTTCCTGCATTCCATTGCATTTTTAACACACCCTTGTAAATTTCCACTCCTGAATTAATTACGTAACAACTACAATCCACAAGTAATTTTTCTTGTCTATGGAGAGTCTTGCTAATTAGtcagttagccagctagcattcTAATTACTGAGCTAGCTTGTTAACTAGAAGGTAGATTGATATATAGATGGATTTGTACATAGGatcttaatatttttaaattgtgtgttttactgctatttatattcattaacaACTTCATTCAAAATCCAACTAAAATCAAAATCTTCTACTGCAAATTTTGAATATCTGACCTGATTTGTGTTCATAATCTTCCTGCTatctttagctagctagcacacaCATGACAGGATTTTTAcattagatttatattaataaatgtttatactgtaagtcatagccagctagctaatatgAGGTGACCTGATGAagtttctgacaggatttttaaataattttcataatcttcactgctaacgCTAGCCAGATAGCTAAAATAAGacaacctgacaggatttcttacagaatttttatttatatttataaatgttaaacaatttccattgttaatgctagctagcatgagTGGATTTctaaataatattcataatcttcactgctagtCATCTAGCTAAGATGAgataacctgacaggatttcttaCAGGATCTTTAAGTGATATTCATAATCTTTACTGCTAACACAGTAGCAGGtagctaacatttaaaaaagatgaaaaacgTTTATGATCTTCACTGATAATGCAGTGAATGGATTTTGAATAGGTGTTAAATGTCagattcataaatgtttataatttccACTGCTAAAGAATGACAGCTATTTAGCTAGTTAAACAGCTAgttaaaaataacattcatgaacaCTAATAATCTCCACTATTAATGCTAGTCAACTAGCTAACAttctaatctgacaggattttcaATTTTCTTCACTGGGCTAATATAGTAATATTCATAGTCTTCACTACTAATGCTAGCAAATTAGCCaccatgagctaacctgacaggattacTGAGAGAATCCTTAAGTGATATTCTTAATCTTTACTGCTAACTGAGTAGCGTACATCACATGACCTGActaaaaagattaataaaaattcataatCTTAACTGATAGTGCAGTGACAgcatttttaagtcatattcataaaggTTTATAATTTCCTCTGCTAATGGTAagcagctagctaacatgagctaatctGATAGAACTTCTCTCAGGATAATTTAAGAACGTGTTTATGAGTGTCGTTATAAAAGTATTCCTTCTTAGAAACTGGGCCACAGAATACAACATAACACAAGAAATACTACATTAAATACTAGCTTTATGAGGAAATTCTCCAGTTAAAGGATTAAGGGAAAACAGGAAGTTTACAGAGGTGTGTTTAAAACGTTACTGTAATGCAGGAGGATGGAAAATGTTTGACCTCAGACTTCATGTCCTGTCCTGTCTTTTATAAGCTccgtcagtgtgtttctgttctcTTGTGTTGATGGGTTTAGTGTTGATGTGGATTTTACATTGTGGTTTGTAGATTAAACTGATCGGCGCTGGACTCAGACCTTCCCTAAGAAAAATCGATATATGAATCgtgaatgactgacagttgtgtaggtgttttgaactctccagaAACCCCGCCCCTTTTCCCTCATCTGACATTAGTAAAGTTTTAGTTGGTGCTCTCGTCTTGACTCGATTTTCCTGACGCGGCGTCCTCGCTTTCTGGCACGGTAAATCCAGGACGTTTTCAGTTCAGTAATgcgaaataaaatgtattaacgTATGTtcgacttagctaacattagacaaataTATAGTTAACGTTagtcagttaactatatttgtGAAATTTTGTCCAACAAATTCCTTCCAAATTTCGATctgaaggaaaaggaaaagaattcTGACAATTCTGAAGATGAAATAGGTCTACAATGACGTGTCAAATcgaacacttttttaaatcagtgataATTCGAAAGTGTTTGCAAACACCAGACATTTCACACTTACCGTGAGCAACATTAGACAAGCAGCTTGTAAAGGGATTATATCGAAACCTCTGTAATACtgtgttattatttagtttttttgcaCCTCCTTCACCGAGACTAGCTGTTATTCCTCCTCGGGGTTTGCAGATCTGTTGGACTGAAGAGCCAGGCGTTGCGTTTTCTTCAGTAGATTAATGAAAGTAAACCTCTACAGCAAAGCACAGATGATGGATTAACACCACGCTTCTCTGTGGTagtattttctaaataaatagaaaatcattttattaatgtgtAGCAGTGAGCGGATTTGGACATACTATTTGGACAACAATCAGATGAAATGTAGGCATAGTAACTAAAGCTTATTGTGTagtaattaagaaaaaaagaaacaaacacacgaTTACGATGCAGTTGAATTCAGTGCCTTAGAGATATTTGCAATTTTTAGACTAAAAGCACTTAAAGTGTTGCGTCACTAACAAAGCCAGGTAGTGATGAATCAGAAAATTGGACTTCAGAACTGATGAACGGAAGAAAGATGTTTGATTTATAAATCAGACTTTTGAAATGATCTCTACAGACTCTGCGTTTTTGTTTGGTACGTCAGTGTTATTATGTTCGTCTAGTGCCTGATTTTGTCTATAGAATGTGTAAAAAACTGGTGCTTTATGAAAAACCTGTCATTCCTGCTGAAAGATCAGTGATATCTACTGGTTTCTAATGGATTTTAATGTGTGCTCTGTAAAGGAATGTATTGTTCCTAATGGTTCCCGATGGATCTAATTTTATTCGAATGATAATCACCTAAACACGAACGAAGGCCATATTGAGTTctaatggaaaccattaaagATTGTAAtggtcttttttatttttattttttatttttatttgacttttcaGCAGAGATATAGGCTCATACCAGAAGTGAAAGTCCATAAACGTCTTGCTTGTCACTTTGCATAACTGGAATTATGTTCACTTTCATGAGAATAAAAGGCTTTCTACataataatgaagaaataaataacactagGGTTAAAGGTCACCGTCATCAGGCCTGACCTTTCTGTGCCTCGAACAGTGAACAACAAAAAGCACTCACACTGTACGTTTATGTGGAAAACAAAATGCACGACACTTTTTTGTATTCATTAAACACTTgaacagaggtcagaggtcaattGTACTGTGATGAATAAACGAAGCGTGTGAAAAACTGAATATTAGGCTGAATTTTCTCTAAGTGTTTGTATTTCATCAGCCTCTGGGTTAATATTGTGTAATAACTGTGTTgctagtattatttttaaataaatgtcattttcaattaaa

Function

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU352823 lncRNA upstream 43928 18575992 ~ 18576356 (+) True G297973
TU352461 lncRNA upstream 366656 18253426 ~ 18253628 (+) True G297650
TU352442 lncRNA upstream 367860 18250282 ~ 18252424 (+) True G297632
TU352441 lncRNA upstream 433148 18186304 ~ 18187136 (+) True G297631
TU352340 lncRNA upstream 622053 17910989 ~ 17998231 (+) True G297558
TU352899 lncRNA downstream 103122 18728974 ~ 18729402 (+) True G298036
TU352992 lncRNA downstream 237148 18863000 ~ 18863586 (+) True G298128
TU353027 lncRNA downstream 376488 19002340 ~ 19066945 (+) True G298150
TU353031 lncRNA downstream 422178 19048030 ~ 19068115 (+) False G298151
TU353030 lncRNA downstream 422283 19048135 ~ 19068115 (+) True G298151
XM_026948143.2 mRNA upstream 92085 18495675 ~ 18528199 (+) True syndig1l
XM_034313659.1 mRNA upstream 374227 18186027 ~ 18246057 (+) True ino80
XM_026948137.2 mRNA upstream 435987 18170603 ~ 18184297 (+) True vps18
XM_034313425.1 mRNA upstream 480133 18130889 ~ 18140151 (+) False pigh
XM_026948089.2 mRNA downstream 219808 18845660 ~ 18849892 (+) False prph2lb
XM_034313444.1 mRNA downstream 220548 18846400 ~ 18849892 (+) True prph2lb
XM_026948087.2 mRNA downstream 225779 18851631 ~ 18857872 (+) True serpina10a
XM_026948088.2 mRNA downstream 225779 18851631 ~ 18857872 (+) False serpina10a
XM_026948155.2 mRNA downstream 269224 18895076 ~ 18904325 (+) True LOC113547694
TU352782 other upstream 116021 18495783 ~ 18504263 (+) False syndig1l
TU352440 other upstream 425153 18186109 ~ 18195131 (+) False ino80
XR_004580105.1 other upstream 682670 17854779 ~ 17937614 (+) False sipa1l1
TU352300 other upstream 813115 17804219 ~ 17807169 (+) False max
TU351537 other upstream 1807491 16812117 ~ 16812793 (+) True G296863
TU353310 other downstream 664133 19289985 ~ 19290539 (+) True G298379
XR_004580076.1 other downstream 703373 19329225 ~ 19329925 (+) True LOC117599671
TU353352 other downstream 898801 19524653 ~ 19546734 (+) False G298409
LOC113523952 other downstream 920220 19546072 ~ 19547137 (+) True LOC113523952
TU353527 other downstream 1456705 20082557 ~ 20083019 (+) False LOC117599696

Expression Profile