RNA id: TU353527


Basic Information

Item Value
RNA id TU353527
length 357
RNA type TUCP
GC content 0.39
exon number 2
gene id LOC117599696
representative False

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 20082506 ~ 20084497 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTCTGAACAGGAACGATGATCACAGTCCTTGTCGCTCTTTGTCTCTTAACATCAGtgaaaCCTTCTAACATCAAGGAGCTTCAAGTTCAAAAAGTAAAGCGTGgagaaaatgtttctataaaatGTGACGACTTGTTCACTTAcacatatgatttattttggtgcAAACAGAGTTTTGGAAAGGCTCCTCAGTCGGTAGGGAGAGGAGTGGAGAGCTCATTCAGACCTGCTGAAGGATTTAATGATGGACGCTTCAGtattagtgtaaataaaaatctgcctAATCTCaacattaaagaaatcaaagaagaGGATACAGGAACATATTTCTGTGCAAAATTGCTGGGATCTTCACTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU353490 lncRNA upstream 12992 19754595 ~ 20069565 (+) True G298476
TU353514 lncRNA upstream 128404 19900968 ~ 19954153 (+) True G298494
XR_004580092.1 lncRNA upstream 327183 19754784 ~ 19755374 (+) True LOC117599710
TU353470 lncRNA upstream 406356 19638087 ~ 19676201 (+) False G298476
TU353497 lncRNA upstream 445178 19637045 ~ 19637379 (+) True G298477
TU353531 lncRNA downstream 100292 20183311 ~ 20190808 (+) True G298511
TU353628 lncRNA downstream 153825 20236844 ~ 20237319 (+) True G298576
TU353641 lncRNA downstream 196475 20279494 ~ 20295153 (+) False G298586
TU353640 lncRNA downstream 208826 20291845 ~ 20295153 (+) True G298586
TU353653 lncRNA downstream 227633 20310652 ~ 20338599 (+) True G298596
XM_034313551.1 mRNA upstream 41378 20039501 ~ 20041179 (+) True LOC117599693
XM_034313550.1 mRNA upstream 41378 20039501 ~ 20041179 (+) False LOC117599693
XM_034313603.1 mRNA upstream 82346 19998932 ~ 20000211 (+) True LOC117599720
XM_034313544.1 mRNA upstream 266492 19781161 ~ 19816065 (+) True LOC113524723
XM_034313581.1 mRNA upstream 290316 19790613 ~ 19792241 (+) True LOC117599703
XM_034313604.1 mRNA downstream 155300 20238319 ~ 20247950 (+) True LOC113524757
XM_026911090.2 mRNA downstream 182086 20265105 ~ 20272249 (+) True LOC113524740
XM_034313539.1 mRNA downstream 297815 20380834 ~ 20390529 (+) True LOC113524754
XM_034313605.1 mRNA downstream 384678 20467697 ~ 20478310 (+) True LOC113524742
XM_034313531.1 mRNA downstream 449107 20532126 ~ 20550322 (+) True LOC113526589
LOC113523952 other upstream 535420 19546072 ~ 19547137 (+) True LOC113523952
TU353352 other upstream 535823 19524653 ~ 19546734 (+) False G298409
XR_004580076.1 other upstream 752632 19329225 ~ 19329925 (+) True LOC117599671
TU353310 other upstream 792018 19289985 ~ 19290539 (+) True G298379
TU352782 other upstream 1578294 18495783 ~ 18504263 (+) False syndig1l
trnar-acg_10 other downstream 206434 20289453 ~ 20289525 (+) True trnar-acg_10
trnar-acg_11 other downstream 207018 20290037 ~ 20290109 (+) True trnar-acg_11
trnae-uuc_6 other downstream 233326 20316345 ~ 20316416 (+) True trnae-uuc_6
trnah-gug_16 other downstream 238514 20321533 ~ 20321604 (+) True trnah-gug_16
trnar-acg_13 other downstream 239071 20322090 ~ 20322162 (+) True trnar-acg_13

Expression Profile