RNA id: TU353653


Basic Information

Item Value
RNA id TU353653
length 217
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G298596
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 20310652 ~ 20338599 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCAACGGTACATGTTCGGCCTGGACTAGTGAGATATGGCTTCATGTCACTTTCCCACTGCACAGCTTCGAGGGAAGCAACAAGCAACTTCACCACTGTAGAAGGGCTGTGGGATACAAACAATGGCCAAAGTACAAGAAGAACGTGGAAAGGCCATGCCGTGACCCGGATTCGAACCGGGGTTGCTGCGGCCACAACGCAGAGTACTAACCACTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU353641 lncRNA upstream 15499 20279494 ~ 20295153 (+) False G298586
TU353640 lncRNA upstream 15499 20291845 ~ 20295153 (+) True G298586
TU353628 lncRNA upstream 73333 20236844 ~ 20237319 (+) True G298576
TU353531 lncRNA upstream 119844 20183311 ~ 20190808 (+) True G298511
TU353490 lncRNA upstream 241087 19754595 ~ 20069565 (+) True G298476
TU353659 lncRNA downstream 19461 20358060 ~ 20358322 (+) True G298602
TU353660 lncRNA downstream 20307 20358906 ~ 20359754 (+) True G298603
TU353665 lncRNA downstream 28535 20367134 ~ 20367364 (+) True G298608
XR_004580090.1 lncRNA downstream 172888 20511487 ~ 20512904 (+) True LOC113524748
TU353708 lncRNA downstream 174332 20512931 ~ 20551519 (+) True G298645
XM_026911090.2 mRNA upstream 38403 20265105 ~ 20272249 (+) True LOC113524740
XM_034313604.1 mRNA upstream 62702 20238319 ~ 20247950 (+) True LOC113524757
XM_034313556.1 mRNA upstream 226155 20082506 ~ 20084497 (+) True LOC117599696
XM_034313551.1 mRNA upstream 269473 20039501 ~ 20041179 (+) True LOC117599693
XM_034313539.1 mRNA downstream 42235 20380834 ~ 20390529 (+) True LOC113524754
XM_034313605.1 mRNA downstream 129098 20467697 ~ 20478310 (+) True LOC113524742
XM_034313531.1 mRNA downstream 193527 20532126 ~ 20550322 (+) True LOC113526589
XM_034313532.1 mRNA downstream 193527 20532126 ~ 20550322 (+) False LOC113526589
XM_034313533.1 mRNA downstream 193527 20532126 ~ 20550322 (+) False LOC113526589
trnar-acg_11 other upstream 20543 20290037 ~ 20290109 (+) True trnar-acg_11
trnar-acg_10 other upstream 21127 20289453 ~ 20289525 (+) True trnar-acg_10
TU353527 other upstream 227633 20082557 ~ 20083019 (+) False LOC117599696
LOC113523952 other upstream 763515 19546072 ~ 19547137 (+) True LOC113523952
TU353352 other upstream 763918 19524653 ~ 19546734 (+) False G298409
trnas-uga_11 other downstream 92163 20430762 ~ 20430843 (+) True trnas-uga_11
XR_004580149.1 other downstream 683662 21022261 ~ 21023055 (+) True LOC117599778
TU354325 other downstream 994666 21333265 ~ 21336047 (+) True G299088
trnag-ucc_25 other downstream 1165604 21504203 ~ 21504274 (+) True trnag-ucc_25
trnag-ucc_26 other downstream 1199048 21537647 ~ 21537718 (+) True trnag-ucc_26

Expression Profile