RNA id: trnar-acg_10


Basic Information

Item Value
RNA id trnar-acg_10
length 73
RNA type tRNA
GC content 0.59
exon number 1
gene id trnar-acg_10
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 20289453 ~ 20289525 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGGCCAGTGGCGCAATGGATAACGCGTCTGACTACGGATCAGAAGATTCCAGGTTCGACTCCTGGCTGGCTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU353628 lncRNA upstream 52134 20236844 ~ 20237319 (+) True G298576
TU353531 lncRNA upstream 98645 20183311 ~ 20190808 (+) True G298511
TU353490 lncRNA upstream 219888 19754595 ~ 20069565 (+) True G298476
TU353514 lncRNA upstream 335300 19900968 ~ 19954153 (+) True G298494
XR_004580092.1 lncRNA upstream 534079 19754784 ~ 19755374 (+) True LOC117599710
TU353640 lncRNA downstream 2320 20291845 ~ 20295153 (+) True G298586
TU353653 lncRNA downstream 21127 20310652 ~ 20338599 (+) True G298596
TU353659 lncRNA downstream 68535 20358060 ~ 20358322 (+) True G298602
TU353660 lncRNA downstream 69381 20358906 ~ 20359754 (+) True G298603
TU353665 lncRNA downstream 77609 20367134 ~ 20367364 (+) True G298608
XM_026911090.2 mRNA upstream 17204 20265105 ~ 20272249 (+) True LOC113524740
XM_034313604.1 mRNA upstream 41503 20238319 ~ 20247950 (+) True LOC113524757
XM_034313556.1 mRNA upstream 204956 20082506 ~ 20084497 (+) True LOC117599696
XM_034313551.1 mRNA upstream 248274 20039501 ~ 20041179 (+) True LOC117599693
XM_034313550.1 mRNA upstream 248274 20039501 ~ 20041179 (+) False LOC117599693
XM_034313539.1 mRNA downstream 91309 20380834 ~ 20390529 (+) True LOC113524754
XM_034313605.1 mRNA downstream 178172 20467697 ~ 20478310 (+) True LOC113524742
XM_034313531.1 mRNA downstream 242601 20532126 ~ 20550322 (+) True LOC113526589
XM_034313532.1 mRNA downstream 242601 20532126 ~ 20550322 (+) False LOC113526589
XM_034313533.1 mRNA downstream 242601 20532126 ~ 20550322 (+) False LOC113526589
TU353527 other upstream 206434 20082557 ~ 20083019 (+) False LOC117599696
LOC113523952 other upstream 742316 19546072 ~ 19547137 (+) True LOC113523952
TU353352 other upstream 742719 19524653 ~ 19546734 (+) False G298409
XR_004580076.1 other upstream 959528 19329225 ~ 19329925 (+) True LOC117599671
TU353310 other upstream 998914 19289985 ~ 19290539 (+) True G298379
trnar-acg_11 other downstream 512 20290037 ~ 20290109 (+) True trnar-acg_11
trnae-uuc_6 other downstream 26820 20316345 ~ 20316416 (+) True trnae-uuc_6
trnah-gug_16 other downstream 32008 20321533 ~ 20321604 (+) True trnah-gug_16
trnar-acg_13 other downstream 32565 20322090 ~ 20322162 (+) True trnar-acg_13
trnae-uuc_7 other downstream 32795 20322320 ~ 20322391 (+) True trnae-uuc_7

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
tiger barb (Puntius tetrazona) unassigned_transcript_2662 True 73 tRNA 0.59 1 NC_056723.1 16057422 ~ 16057494 (-)