RNA id: XR_004580092.1


Basic Information

Item Value
RNA id XR_004580092.1
length 318
lncRNA type inter_gene
GC content 0.33
exon number 3
gene id LOC117599710
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 19754784 ~ 19755374 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAATAACCATTTGATTGTTGTTTTAACAACCTCCAATATAATATCTATTATTGTAATCATGGTTCTGGTTGGAGTTTTacttaaacaaagaaaagGGGCTTCCAACGACCATCCAAATAACACAAATCAGGCTGATGAAGAAGATCTCTTGAACTATGCAGCTGTGAGTTTTGCTAAGAAACCTTCATCCTCCAGAACATCCAGAGACAAGAACAATGAAGATGTTTATGCACAAGTTAAAATAACATAAAGagaaattaattcagttttaaagcACCAGACGCTAGAGATTTATTGCAAACATTATTTGATCATGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU353470 lncRNA upstream 78583 19638087 ~ 19676201 (+) False G298476
TU353497 lncRNA upstream 117405 19637045 ~ 19637379 (+) True G298477
TU353380 lncRNA upstream 223853 19530647 ~ 19530931 (+) True G298427
TU353351 lncRNA upstream 228321 19401549 ~ 19526463 (+) True G298409
TU353514 lncRNA downstream 145594 19900968 ~ 19954153 (+) True G298494
TU353531 lncRNA downstream 427937 20183311 ~ 20190808 (+) True G298511
TU353628 lncRNA downstream 481470 20236844 ~ 20237319 (+) True G298576
TU353641 lncRNA downstream 524120 20279494 ~ 20295153 (+) False G298586
TU353640 lncRNA downstream 536471 20291845 ~ 20295153 (+) True G298586
XM_034313545.1 mRNA upstream 23510 19729615 ~ 19731274 (+) True LOC117599681
XM_034313546.1 mRNA upstream 24070 19729615 ~ 19730714 (+) False LOC117599681
XM_034313549.1 mRNA upstream 78570 19674507 ~ 19676214 (+) True LOC117599691
XM_034313555.1 mRNA upstream 92334 19657531 ~ 19662450 (+) False LOC117599695
XM_034313554.1 mRNA upstream 95155 19657531 ~ 19659629 (+) True LOC117599695
XM_034313548.1 mRNA downstream 8676 19764050 ~ 19782996 (+) True LOC117599690
XM_034313544.1 mRNA downstream 25787 19781161 ~ 19816065 (+) True LOC113524723
XM_026911053.2 mRNA downstream 25787 19781161 ~ 19783062 (+) False LOC113524723
XM_034313581.1 mRNA downstream 35239 19790613 ~ 19792241 (+) True LOC117599703
XM_034313603.1 mRNA downstream 243558 19998932 ~ 20000211 (+) True LOC117599720
LOC113523952 other upstream 207647 19546072 ~ 19547137 (+) True LOC113523952
TU353352 other upstream 208050 19524653 ~ 19546734 (+) False G298409
XR_004580076.1 other upstream 424859 19329225 ~ 19329925 (+) True LOC117599671
TU353310 other upstream 464245 19289985 ~ 19290539 (+) True G298379
TU352782 other upstream 1250521 18495783 ~ 18504263 (+) False syndig1l
TU353527 other downstream 327183 20082557 ~ 20083019 (+) False LOC117599696
trnar-acg_10 other downstream 534079 20289453 ~ 20289525 (+) True trnar-acg_10
trnar-acg_11 other downstream 534663 20290037 ~ 20290109 (+) True trnar-acg_11
trnae-uuc_6 other downstream 560971 20316345 ~ 20316416 (+) True trnae-uuc_6
trnah-gug_16 other downstream 566159 20321533 ~ 20321604 (+) True trnah-gug_16

Expression Profile