RNA id: XM_034313554.1


Basic Information

Item Value
RNA id XM_034313554.1
length 1695
RNA type mRNA
GC content 0.36
exon number 4
gene id LOC117599695
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 19657531 ~ 19662450 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGGTTTAATCTTGCACCCACAAGTTCATTACCTCACTGTCACGTTGTCTGAACAGGAACGATGATCACAGTCCTTGTCGCTCTTTGTCTCTTAACATCAGcaaAACCTTCTAACATCAAGGAGCTTCAAGTTCAAAAAGTAAAGCGTGgagaaaatgtttctataaaatGTGATGACTTGTCcagtgataaaaataaattagtttggTTCAAACAGAGTTTTGGAAAGGTTCCTCAGTGGGTAGGGAGAGAAGTGGAGAGCTCATTCAGAGTCGGTGCAGGATTTAATGATGGACGTTTCAGtattagtgtaaataaaaatctgcttaatctcaacattaaagaaatcaaagaagaGGATACAGGAACATATTTCTGTGCAGAATTGCTGGAATCTTCTCTACACTTTGGATCTGGAACCCTTTTGGTTGTTGAAGCTGAGGAGATGAAACGGCATCCTCCGACTCTAAAGGTGATGGAGAACGGAGAGTCGCTCACACTCCAGTGTTCAGTACAAGCTTTTAATTCAAGCTGTGAAGAACAGAGTATGTACTGGTTCAGACACGGCTCAAGAGAATCTCATCCAggaatcatttacactcatggaGATGGCAGTGATGAGTGTAAGAAGAGCTCTGAGGCTGGTTCTCCTACACAGAGCTGTGTCTACACTCTCCCCAAGAGGAAGCTCACAACCTCTGATAATGGAACGTTCTACTGTGCTGTGGCTGCGTGTGGACAAATCCTCTTTACTAATGGAACTGAAGTTAAAGTAGCAGGTTACAGTTGTACTGATCAGGCACATGTGCTGTTCTTGCTCTTAATTTTTAGAGTTGGAGTTCTTGCCATCATGCTCATTATCTTTACAATAGTcctcatcattttaaaattaagatcAGATTAAATATTCAAAGACAAATGCAATGAATCCTGAGCTAAGGAGAAAACAATGTGTTAGCTTTCATTAGTGTTGTGATGCTCGAGACCTGTCTCAGTCTTGTCATAAACTCGAATAAACTTGAATAAGCATAAACTTGTTGCTGAAATTCTATATGGTCTTTTCTCAGTCTTGGCCTACAAAGACTCAAAATACTTCTTTTAGACACCACCTGAGACCATATCATCATCTCCCTGAGCCAGTATTTTGTAATGTTCCCATATACCTATATATTAAGAGCctgtttcaaaatatttcatgttcttatgttcaaaataatatagCACAAGTACTTGTGTACAGCTGTATTTGGTCTCAAAGATGTATGAGACAAAACAAATTCTAGTTTTTTATGCACTTTATTTACCTGCTGTATGCTTAAATCAAAGGAAATGTTCtttgatttacaaatgtttacatgtgCTATACTGCTTCatgttgcattttttaataaaaaattaatattttgtataactagcaaactcattttatttacctcaGACATGCTCCCGAACCCGTCACTGTTTTAATATTACTCAGTGCTTATGTTGGCTGTATAGTGGAATGACTTTGGTTTAACTGTGGTGTGAagttattctttaatatatttGCTATCTTTTCTATTATTCAGTGTAATTAAATTTTGAATACAGCTTCTTTAACTTAAACCAGCAGGAAATAGAACATAAAGTTGgtttttactgtataattaaGTAATTGTATACCTAATTATATCAATTTCTTGTCCCATTCcatgt

Function

GO: NA

KEGG:

id description
ko05150 Staphylococcus aureus infection
ko05320 Autoimmune thyroid disease
ko05330 Allograft rejection
ko05332 Graft-versus-host disease
ko04940 Type I diabetes mellitus

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU353497 lncRNA upstream 20152 19637045 ~ 19637379 (+) True G298477
TU353380 lncRNA upstream 126600 19530647 ~ 19530931 (+) True G298427
TU353351 lncRNA upstream 131068 19401549 ~ 19526463 (+) True G298409
XR_004580087.1 lncRNA upstream 233921 19423019 ~ 19423610 (+) True LOC117599707
TU353333 lncRNA upstream 330722 19326402 ~ 19326809 (+) True G298398
TU353490 lncRNA downstream 94966 19754595 ~ 20069565 (+) True G298476
XR_004580092.1 lncRNA downstream 95155 19754784 ~ 19755374 (+) True LOC117599710
TU353514 lncRNA downstream 241339 19900968 ~ 19954153 (+) True G298494
TU353531 lncRNA downstream 523682 20183311 ~ 20190808 (+) True G298511
TU353628 lncRNA downstream 577215 20236844 ~ 20237319 (+) True G298576
XM_034313547.1 mRNA upstream 55141 19600748 ~ 19602390 (+) True LOC113523907
XM_034313573.1 mRNA upstream 68962 19524653 ~ 19588569 (+) False LOC113525605
XM_034313574.1 mRNA upstream 68962 19586359 ~ 19588569 (+) True LOC113525605
XM_026912163.2 mRNA upstream 131117 19524653 ~ 19526414 (+) False LOC113525605
XM_034313572.1 mRNA upstream 165015 19490938 ~ 19492516 (+) False LOC113523955
XM_034313549.1 mRNA downstream 14878 19674507 ~ 19676214 (+) True LOC117599691
XM_034313545.1 mRNA downstream 69986 19729615 ~ 19731274 (+) True LOC117599681
XM_034313546.1 mRNA downstream 69986 19729615 ~ 19730714 (+) False LOC117599681
XM_034313548.1 mRNA downstream 104421 19764050 ~ 19782996 (+) True LOC117599690
XM_034313544.1 mRNA downstream 121532 19781161 ~ 19816065 (+) True LOC113524723
LOC113523952 other upstream 110394 19546072 ~ 19547137 (+) True LOC113523952
TU353352 other upstream 110797 19524653 ~ 19546734 (+) False G298409
XR_004580076.1 other upstream 327606 19329225 ~ 19329925 (+) True LOC117599671
TU353310 other upstream 366992 19289985 ~ 19290539 (+) True G298379
TU352782 other upstream 1153268 18495783 ~ 18504263 (+) False syndig1l
TU353527 other downstream 422928 20082557 ~ 20083019 (+) False LOC117599696
trnar-acg_10 other downstream 629824 20289453 ~ 20289525 (+) True trnar-acg_10
trnar-acg_11 other downstream 630408 20290037 ~ 20290109 (+) True trnar-acg_11
trnae-uuc_6 other downstream 656716 20316345 ~ 20316416 (+) True trnae-uuc_6
trnah-gug_16 other downstream 661904 20321533 ~ 20321604 (+) True trnah-gug_16

Expression Profile