LOC113525605


Basic Information

Item Value
gene id LOC113525605
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 19524653 ~ 19588569 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026912163.2
CAGGTTCATTACCTCACTTTGTCTAAACAGGAACGATGATCACACTCTTTGTCGCTCTTTACTCTCTGCTTTGTCTCTTCACAGCTGtaaaaacttCTGACATCAAAGAGCTTCACGTGAAAACAGTAAAGCGTGGAGAAAATGTAACTATGGAGTGTAACTTTAACATCAAAAACAAAGATAATTTAGTTTGGTACAGACAGAGTTTTGGAAAATTGCCTCAGTTTTTAGCAAGACATTACAGTAACACTTTGGGCTACAAATTTGATGATGGATTTAAAGATAGCCGCTTCAGTATTACTGTAAATGACCATAAGTTTGATCTCAACATTAATGAAGCGATAGACGATGATGACGATTCGGAGGGAAGTGCAGAGTTCACATCTGGAACACCTATGCAATTTGAAGttgAAGAGATGAAACTCTGTCCTACACCTGGAACGGTTAACAAGAGCACAGATTCTGGTACACTCCAGGGTTCAGACAGTAGCGATGGAAAAGGTTACAGTTGTACTGATCAGATGCATGTGCTGTTCTGGCTCTCCATTGTTAGAGTTCTTGCCTTCATGCTTATTGTCTTTCCAATAATCCTCCTTGTTTTCAAATTAAGATCAAATTAGAAATTCaaatacaaatggaaaaaatactGATTTAAGAAAACAATGTGTTAGATTTAACTAGAGCTAATTGCTTATACTGGCTGTATACTGGAATGATTTTGGTCTAACTGTAATGTGGAAGTATTTACCAGCTGTACTTACAGCTGCATTTAAgagctcctgagtggcacagtAGAAAATCGTTCACCCTATTGTCTCGAGCTCtaatcccaacaatgccacaaCCATCTGTGGCttggagtccaagagagcataattggccatgctctcgtGGAGGTAgggacatactctctctcccctgtcaatcacagcaacactatccaatcatgggcatctgtgagtgtgttattctgcacCCTGATCTTGCATGAGCAGCACttcaaaaagatgcagctgGCTGGCTTCAGATGTCTCAGAGATAGCACGTGATAGCCTTCGCCCtgcctggttggtagctgttgtgtgataggggagacctAACTGGAGGGAGGGAATTGCTCATGAACAAATTAGAGAGGaagtcatggaaaaaaaaactgcatttaataaaataaaatctaaagtgAATATACAATGCAGTAGTCCTCTTTATTCCTAAGATTTTTTTATAACTTCAAAGATaacatcatatttttcacatcacaaCATGCACATGTTTGTGAGTCCAGGGAGGTGTATTAGA
>XM_034313573.1
CAGGTTCATTACCTCACTTTGTCTAAACAGGAACGATGATCACACTCTTTGTCGCTCTTTACTCTCTGCTTTGTCTCTTCACAGCTGtaaaaacttCTGACATCAAAGAGCTTCACGTGAAAACAGTAAAGCGTGGAGAAAATGTAACTATGGAGTGTAACTTTAACATCAAAAACAAAGATAATTTAGTTTGGTACAGACAGAGTTTTGGAAAATTGCCTCAGTTTTTAGCAAGACATTACAGTAACACTTTGGGCTACAAATTTGATGATGGATTTAAAGATAGCCGCTTCAGTATTACTGTAAATGACCATAAGTTTGATCTCAACATTAATGAAGCGATAGACGATGATGACGATTCGGAGGGAAGTGCAGAGTTCACATCTGGAACACCTATGCAATTTGAAGGTAAAGAGATGAAACTCTGTCCTACACCTGGAACAGTTAACAAGAACGCAAATTCTGTTACACTCCAGGGTTCAGACAGCAGCGATGGAAAAGGAGATGACTATTGGATTAATACCTTAACAATCTTCAATATAACATCTGTTATTGTAATCATGGTTctgattttagttttatttaaaaatcaaagaaaagATTCTTCATCAAGAAACCAAATTCCCACCAATCAGGCTGATGATGATGTCTTGAACTATGCAGCTGTGAGTTTTACTAAGAAACCTTCATCCTCCAGAACATCCAGAGACAAGAGCCATGAAGACGTTTATGcacaagttaaaataaattagataaaAAGAATTTACTTTACTTGTTTTTTAGACTTGAAAAACATTATTCACTCATTCTGTAGACAGATTTGTCATGTTTTAATCAgacaaaagcatttttattgctgtaaaATTTATCACCATTTCCCAACATTTTTGTTGTACTAATTTGCCATACTTGATGGATGtagttcttttttattattattattttttgtgatCAAAATCCTACACCTGCTGGGCTTTTTTCCTGAAAGCCTTGTCTAAGTTTTCTCAGCATTTTCTCTTCAAATAGTGCACATTATTTCGagaatgtaaaaaattatttttttgtttgattctgAAGGTTAAACTATCAACAAATGGGTCATGGTAGACAATTTGcttaaacttttgtttttgtggacCACTTTTCATGAATATTGTAATAACTTTAGATTAGCTAAAACAATTTTTATAGCCAGTACATCTGTAAACATAAtacattttccactttttcAGAAATACTTAGGGCCTTTTAAGTGCAAGAGGGCTCAGTATAAAGACGAGTGGTTACTGATGAGATTCACTTGCTTAACCTGAAATTAATTCCAGACACTAAATattaaatcagattaaaaatgtatattgatGACTGATGAAGTGCCAAGGAGtcctttattttaaatgttcatcATTTACATTCTGATTTGTTAACAAATACTACAAACGCTGTGTGACATCATTTTGTTACTTTCTTGTGGGTTCCTATTCAAGATTAAGAACATTAGAAACATGACCATTATATAGATGTACCTAATATGCCTCCCTGGTTATATTCAGAAATGTATGTGAATGATGTTAATGACCATATTGTGCCATCTCTTACAGCCCTGATGAAGATATTTAAGC
>XM_034313574.1
aaaactttcatttaaaatagtaatattacatatttaggTCACTTACtgacattataaaacattaaatattacacgtttttttacggaaaaaaaattaaaaaaggagcTTCACATGAAAAAAGTAAAGCATGGAGAAGATTTAACTATGGAGTGTAACCTTAACATCAAAAACAAAGATAATTTAGTTTGGTACAGACAGAGTTTTGGAAGAGTGCCTCAGTTTTTAGCAAAACCATACAGTGACACTTTGGGCTACACATTTGATCCAGGATTTAAAGATAGCCCCTTCAGTATTACTGTAAATGCCCATAAGTTTGATCTCAACATTAATGAAATGAGAGAAGATGATGTAGGAGAATATTTCTATATAGAAGTTGATGGAAGTATACTAAAGTTCACATCTGGAACACGTCTACAATTTGAAGGTAAAGAGATGAAACTCTGTCCTACACCTGGAACAGTTAACAAGAACGCAAATTCTGTTACACTCCAGGGTTCAGACAGCAGCGATGGAAAAGGAGATGACTATTGGATTAATACCTTAACAATCTTCAATATAACATCTGTTATTGTAATCATGGTTctgattttagttttatttaaaaatcaaagaaaagATTCTTCATCAAGAAACCAAATTCCCACCAATCAGGCTGATGATGATGTCTTGAACTATGCAGCTGTGAGTTTTACTAAGAAACCTTCATCCTCCAGAACATCCAGAGACAAGAGCCATGAAGACGTTTATGcacaagttaaaataaattagataaaAAGAATTTACTTTACTTGTTTTTTAGACTTGAAAAACATTATTCACTCATTCTGTAGACAGATTTGTCATGTTTTAATCAgacaaaagcatttttattgctgtaaaATTTATCACCATTTCCCAACATTTTTGTTGTACTAATTTGCCATACTTGATGGATGtagttcttttttattattattattttttgtgatCAAAATCCTACACCTGCTGGGCTTTTTTCCTGAAAGCCTTGTCTAAGTTTTCTCAGCATTTTCTCTTCAAATAGTGCACATTATTTCGagaatgtaaaaaattatttttttgtttgattctgAAGGTTAAACTATCAACAAATGGGTCATGGTAGACAATTTGcttaaacttttgtttttgtggacCACTTTTCATGAATATTGTAATAACTTTAGATTAGCTAAAACAATTTTTATAGCCAGTACATCTGTAAACATAAtacattttccactttttcAGAAATACTTAGGGCCTTTTAAGTGCAAGAGGGCTCAGTATAAAGACGAGTGGTTACTGATGAGATTCACTTGCTTAACCTGAAATTAATTCCAGACACTAAATattaaatcagattaaaaatgtatattgatGACTGATGAAGTGCCAAGGAGtcctttattttaaatgttcatcATTTACATTCTGATTTGTTAACAAATACTACAAACGCTGTGTGACATCATTTTGTTACTTTCTTGTGGGTTCCTATTCAAGATTAAGAACATTAGAAACATGACCATTATATAGATGTACCTAATATGCCTCCCTGGTTATATTCAGAAATGTATGTGAATGATGTTAATGACCATATTGTGCCATCTCTTACAGCCCTGATGAAGATATTTAAGC

Function

GO:

id name namespace
GO:0016149 translation release factor activity, codon specific molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026912163.2 False 1302 mRNA 0.40 4 19524653 19526414
XM_034313573.1 False 1622 mRNA 0.33 6 19524653 19588569
XM_034313574.1 True 1639 mRNA 0.31 5 19586359 19588569

Neighbor

gene id symbol gene type direction distance location
LOC113523955 NA coding upstream 32137 19490938 ~ 19492516 (+)
LOC117599701 NA coding upstream 43935 19479154 ~ 19480718 (+)
LOC117599700 NA coding upstream 58505 19368332 ~ 19466148 (+)
LOC117599704 NA coding upstream 121883 19381325 ~ 19402770 (+)
LOC113524710 NA coding upstream 157710 19366006 ~ 19366943 (+)
LOC113523907 LOC108261534 coding downstream 12179 19600748 ~ 19602390 (+)
LOC117599695 LOC108261534 coding downstream 68962 19657531 ~ 19662450 (+)
LOC117599691 NA coding downstream 85938 19674507 ~ 19676214 (+)
LOC117599681 LOC108261534 coding downstream 141046 19729615 ~ 19731274 (+)
LOC117599690 NA coding downstream 175481 19764050 ~ 19782996 (+)
LOC117599707 NA non-coding upstream 101043 19423019 ~ 19423610 (+)
G298398 NA non-coding upstream 197844 19326402 ~ 19326809 (+)
G298397 NA non-coding upstream 199219 19325184 ~ 19325434 (+)
G298381 NA non-coding upstream 229045 19295363 ~ 19295608 (+)
G298378 NA non-coding upstream 234915 19289466 ~ 19289738 (+)
G298477 NA non-coding downstream 48476 19637045 ~ 19637379 (+)
G298476 nitr1,nitr6,LOC108261534,LOC108258220,LOC108258223 non-coding downstream 49518 19638087 ~ 20069565 (+)
LOC117599710 NA non-coding downstream 166215 19754784 ~ 19755374 (+)
G298494 NA non-coding downstream 312399 19900968 ~ 19954153 (+)
G298511 NA non-coding downstream 594742 20183311 ~ 20190808 (+)
G298379 NA other upstream 234114 19289985 ~ 19290539 (+)
itpk1a itpk1,LOC108257830 other upstream 387040 19095952 ~ 19137613 (+)
syndig1l syndig1l,LOC107562693,LOC107659181,LOC107602907,LOC107711667 other upstream 996454 18495675 ~ 18528199 (+)
ino80 ino80,LOC107668207,LOC107739367,LOC107721325 other upstream 1278596 18186027 ~ 18246057 (+)
sipa1l1 sipa1l1,LOC107721317,LOC107756605,LOC107659170 other upstream 1582475 17854724 ~ 17942178 (+)
LOC117599696 NA other downstream 493937 20082506 ~ 20084497 (+)
flrt2 flrt2,LOC108258011 other downstream 1237120 20825689 ~ 20838690 (+)
G299088 zgc:86709,ACTC1,actc1,LOC108414322 other downstream 1744696 21333265 ~ 21336047 (+)
psmc6 psmc6,LOC107668141,LOC107549540,LOC107582103 other downstream 2119789 21708358 ~ 21719463 (+)
LOC113525043 NA other downstream 2162997 21751566 ~ 21755344 (+)

Expression


Co-expression Network