RNA id: TU353708


Basic Information

Item Value
RNA id TU353708
length 1080
lncRNA type sense_over
GC content 0.38
exon number 2
gene id G298645
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 20512931 ~ 20551519 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tataactgtatactatatagtaaAAAGGGctaattgtgtaaacaggaagttatgagtatgagcatcagtgtcatttctgaattcattatagtctTAACAGTCTATTGTGTCAAACAGAAGTTATTAATTGTTCAGTGATGGAGTCTTGagaactgttcttagcaattgcaggcctaacatccacagccatctttatggtttctgtaTGGTAGCATCTGCAGTAAGCTCATGGTTATCTTTAGgttatctttaggctgtcctgtggggccatcctcagcagcagcgattGATTTACAGGTGATGAGAACTACAACCAGTAACAGGGCATCAGGATTTAAATTTAAGTACATGTTGCAttgattattgttttatgtCATAGTCAAGTGTCATTCCACTGAGGTGGCCTGTTTGTAATTTCTCATACCCCAAACAACACAACAGTCAGGTCATTTTGTACTATTGTACTAGTAAATGGATAAGGTTGACACGCTTCTGTATTTCAGGTGGAAGCTGGACAGAAATTGGAGCAGTAATGTGTAATTTCCTTATGTGTATTTGAGCAAAAATTTAGGACTTTTTACCTACACTTACATACAGAATGATCAATGATCACAGATGCAAACAAGGCACACAACacactttaaataaacaatacacattatatacacaccagacacagacacacacaaacgttTGCCTGCATGCTGCCCATCCTGAGCATCCTATAACACAACCTTCCCAGCATAGTTGGTGTTGGGGAAAAATGCCagctcaaatacacacacacaaacatgcataaATATCACACCAACATATCACagaaactctcacacacacatgcatggaaATGACATTACACCGCACACTTACACAATCCCACAGACAccacaaatatacacactatacacacacatcacacacaacacaaagagACGCACAAAAGATACACACCCATACACCACAAACCTGTACATTAGGGATGTAAAttaatatgaatacattatttaaactcAATAGATTTGGTAGATTAGATAGATGaggtttcataaaaaaataaaaacacagatcCGATCTGTAGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580090.1 lncRNA upstream 27 20511487 ~ 20512904 (+) True LOC113524748
TU353665 lncRNA upstream 145567 20367134 ~ 20367364 (+) True G298608
TU353660 lncRNA upstream 153177 20358906 ~ 20359754 (+) True G298603
TU353659 lncRNA upstream 154609 20358060 ~ 20358322 (+) True G298602
TU353653 lncRNA upstream 174332 20310652 ~ 20338599 (+) True G298596
TU353730 lncRNA downstream 49610 20601129 ~ 20626202 (+) False G298661
TU353731 lncRNA downstream 49610 20601129 ~ 20626202 (+) True G298661
TU353732 lncRNA downstream 56458 20607977 ~ 20610464 (+) True G298662
TU353737 lncRNA downstream 65289 20616808 ~ 20630563 (+) True G298666
XR_004580089.1 lncRNA downstream 199365 20750884 ~ 20757627 (+) True LOC117599708
XM_034313605.1 mRNA upstream 34621 20467697 ~ 20478310 (+) True LOC113524742
XM_034313539.1 mRNA upstream 122402 20380834 ~ 20390529 (+) True LOC113524754
XM_026911090.2 mRNA upstream 240682 20265105 ~ 20272249 (+) True LOC113524740
XM_034313604.1 mRNA upstream 264981 20238319 ~ 20247950 (+) True LOC113524757
XM_034313556.1 mRNA upstream 428434 20082506 ~ 20084497 (+) True LOC117599696
XM_026911101.2 mRNA downstream 101703 20653222 ~ 20662651 (+) False LOC113524745
XM_026911100.2 mRNA downstream 101717 20653236 ~ 20662650 (+) True LOC113524745
XM_034313537.1 mRNA downstream 104595 20656114 ~ 20662654 (+) False LOC113524745
XM_034313538.1 mRNA downstream 104902 20656421 ~ 20662654 (+) False LOC113524745
XM_026911099.2 mRNA downstream 112563 20664082 ~ 20677515 (+) True ilvbl
trnas-uga_11 other upstream 82088 20430762 ~ 20430843 (+) True trnas-uga_11
trnae-uuc_8 other upstream 180790 20332070 ~ 20332141 (+) True trnae-uuc_8
trnar-acg_14 other upstream 184168 20328691 ~ 20328763 (+) True trnar-acg_14
trnah-gug_18 other upstream 185960 20326900 ~ 20326971 (+) True trnah-gug_18
trnah-gug_17 other upstream 189871 20322989 ~ 20323060 (+) True trnah-gug_17
XR_004580149.1 other downstream 470742 21022261 ~ 21023055 (+) True LOC117599778
TU354325 other downstream 781746 21333265 ~ 21336047 (+) True G299088
trnag-ucc_25 other downstream 952684 21504203 ~ 21504274 (+) True trnag-ucc_25
trnag-ucc_26 other downstream 986128 21537647 ~ 21537718 (+) True trnag-ucc_26
trnag-ucc_27 other downstream 1029365 21580884 ~ 21580955 (+) True trnag-ucc_27

Expression Profile