RNA id: TU353730


Basic Information

Item Value
RNA id TU353730
length 1514
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G298661
representative False

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 20601129 ~ 20626202 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTTCCTTTAATCACAATGATTCACAATCATTTAAATGGtaaacataaacacatgtagacaccaaataaatcactaaaaaactacaaaacagacatttaaattaaaacaacatgAACGTCAAGCATgtgatttattatattattaaataatattataatttagcCATTTAGCTCCTCTTTCACTATGTATTAACTACACaggaacacaaaaaaaaaaactgcagctcaTCTTCTGTTGTCCATGTCCTGCTTCCTCTGTATTATTATACCATTAAATTAATAGCCTATACCATTAGTACTTGGTATAATACTAACAGAAATGATCTATTAATGTTAGCTGCTgacattaaaattttttaaacaattacaaCTTGGTAGAAAAGATAAGAAATGTTAGCTATATCAGTTTGAGAACATTGGTTAAAGTAAGCATAGAAACATACCATTTCTATTTGGATTGGGTACAAATTCAAAATATCGACATTCAAATGCagattttttagatttaaattcaaatttcaaatggcATGATCCTAACTTCATATGTCTGTCCTGTGTGAATGACCTGGTGTGCTTTCAGAGTACTCTGTcgagtaaaactcttcccacactgtgagcagtaatacggcttctctcctgtgtgaatgacCTGGTGTGTCTGGAGATCACTTTGTtgaataaaactcttcccacaatCTGaacagtgatacggcttctctcctgtgtgaacacGTTGGTGTCGTTGGAGACTACTGTGATGGGCAAAATTCATTCCGCACTGTAAGCAGTGATGCggcttttctcctgtgtgaatgaacTGGTGTGCTTTGAAAGTACTTTGTcgattaaaactcttcccacactgtgagcagtgataaggtctttctcctgtgtgaatgcgctggtgtgttTGGAGATCACTTTGTTGAATAAAACTCCtcccacactctgagcagtgatacggcctCTCTCCTGTATGAATGCGCTGATGTGTCTGGAGATGACTCTGTTGcttaaaactctttccacactctgagcagtgaTATGGCTTTTCCCCATTATGAATGCGCTGATGTCGTTGGAGATTACTGTGTTGGGcgaaactcttcccacactctgagcactgatgaggcttctctcctgtgtgactGCGCAGGTGTATTTGGAGATCACTCTGTCTAacaaaactcttcccacactgtgagcagtgatgtggtttctctcctgtgtgaatgtgctggTGTCTTCTGAGATTTTTCTGGTCAGTAAAATTCTTCCCACACTGCAAGCACTGATGGACTTCTTTCTGCTTTTGCAGAGTACCAGAGATTGTGTGATGAATAGTGGAGCTTCTTGCTGTCATAAGATTCTGATACATTACCTCTCCTGATTTTATCAGTCTCTCATATTCCTCGGAGTGGCACCTTGTGAAGTGTTTGTGGAGGCAAATTTGAGTTGTATAGGAAAGTGAACACCAGAAGCAGGAGAAGACTTGTAACTGGGCATCATCTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU353708 lncRNA upstream 49610 20512931 ~ 20551519 (+) True G298645
TU353729 lncRNA upstream 61262 20539362 ~ 20539867 (+) True G298660
XR_004580090.1 lncRNA upstream 88225 20511487 ~ 20512904 (+) True LOC113524748
TU353665 lncRNA upstream 233765 20367134 ~ 20367364 (+) True G298608
TU353660 lncRNA upstream 241375 20358906 ~ 20359754 (+) True G298603
XR_004580089.1 lncRNA downstream 124682 20750884 ~ 20757627 (+) True LOC117599708
XR_004580088.1 lncRNA downstream 124682 20750884 ~ 20757627 (+) False LOC117599708
TU353826 lncRNA downstream 199492 20825694 ~ 20838598 (+) False flrt2
TU353829 lncRNA downstream 199492 20825694 ~ 20838565 (+) False flrt2
TU354113 lncRNA downstream 323639 20949841 ~ 20950068 (+) True G298933
XM_034313531.1 mRNA upstream 50807 20532126 ~ 20550322 (+) True LOC113526589
XM_034313532.1 mRNA upstream 50807 20532126 ~ 20550322 (+) False LOC113526589
XM_034313533.1 mRNA upstream 50807 20532126 ~ 20550322 (+) False LOC113526589
XM_034313605.1 mRNA upstream 122819 20467697 ~ 20478310 (+) True LOC113524742
XM_034313539.1 mRNA upstream 210600 20380834 ~ 20390529 (+) True LOC113524754
XM_026911101.2 mRNA downstream 27020 20653222 ~ 20662651 (+) False LOC113524745
XM_026911100.2 mRNA downstream 27034 20653236 ~ 20662650 (+) True LOC113524745
XM_034313537.1 mRNA downstream 29912 20656114 ~ 20662654 (+) False LOC113524745
XM_034313538.1 mRNA downstream 30219 20656421 ~ 20662654 (+) False LOC113524745
XM_026911099.2 mRNA downstream 37880 20664082 ~ 20677515 (+) True ilvbl
trnas-uga_11 other upstream 170286 20430762 ~ 20430843 (+) True trnas-uga_11
trnae-uuc_8 other upstream 268988 20332070 ~ 20332141 (+) True trnae-uuc_8
trnar-acg_14 other upstream 272366 20328691 ~ 20328763 (+) True trnar-acg_14
trnah-gug_18 other upstream 274158 20326900 ~ 20326971 (+) True trnah-gug_18
trnah-gug_17 other upstream 278069 20322989 ~ 20323060 (+) True trnah-gug_17
XR_004580149.1 other downstream 396059 21022261 ~ 21023055 (+) True LOC117599778
TU354325 other downstream 707063 21333265 ~ 21336047 (+) True G299088
trnag-ucc_25 other downstream 878001 21504203 ~ 21504274 (+) True trnag-ucc_25
trnag-ucc_26 other downstream 911445 21537647 ~ 21537718 (+) True trnag-ucc_26
trnag-ucc_27 other downstream 954682 21580884 ~ 21580955 (+) True trnag-ucc_27

Expression Profile