RNA id: XM_034313537.1


Basic Information

Item Value
RNA id XM_034313537.1
length 1892
RNA type mRNA
GC content 0.42
exon number 4
gene id LOC113524745
representative False

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 20653222 ~ 20662654 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTTGCTGTAGTGTACGAACGGAAACTTGTACAGTGTCTGGGGGAGAGACATCAGGTTCTGTGGGACATGTCCCGGACCTTCAGAAAGatataaaaaaggaagaacCTGAATATGAAGAGTGAAACCACGACAGGCTCTGTGGGACACATCACGCCTGTGtgtcaacacacacatgtaaaaaaggaagaagctgaagaagaagaCTATCTCTGTGATGGAACATCAAACTCTGTGGAAAACATAGTCCAACTGAACGGAGGATTTCATGTAAAAGAGGAAGAGTCTGAGGATGAAGACTACCTCCATACAATGGAAATGAACACTGCCCAGTTAGAAGTCTTGTCCTGCTCCTGGTGTTCACTTTCTAGTACGTCCCAAAATTACCTCCACAAACACATCAGAAGATGCCACTATGAGGAATATGAGAAGTTAAAATCAGGAGAGATAAAATATGAGAATCCGATGCCCATAATAAGCACCAGTATTCAGCAAACAGTCTCTGGTAATACCTCTGATCAGCGAATGAAGAAAGAAGTCTATCCctgctcagagtgtgggaagagttttgctGACCGGAGTAATCTCAGACGACACCAGTACATTCACACAGGGGTGAAGCCACATCACTGCTCATGGTgtggaaagtgttttattcaaagGAGAGATCTCAAAGAACACCAGGTCATTCACACcagagagaagccgtatcactgctcacagtgtgggaagagtttttcACGACAGCGTGACCTCCAAATACACCGACGcgttcacacaggagaaaagtTGTATAACTGCTCAGAGTGTTCAAAAAGTTTTAATCGACAGAGTAATCTCATACAACACCAGATCATTCACaccggagagaagccgtatcactgctcacagtgtgggaagggTTTTACTCGACAGAGTAATCTCATACAACACCAGGTCatccacacaggagagaagccgtatcagtgctcacagtgtgggaagagttttattcaCCAAAGTTATCTCCAACGACACCAGTGTGTTCACATGGGAGacaagccgtatcactgctcacaatGTGAAAAGAGTTTTACTCGACAGATTGATGTCCAGCGACACCAGCGTATCcacacaggagaaaagccatatcagtgctcacagtgtgggaagagcttTACTCGACAGAGTACTCTTAAATCACACtggcgcattcacacaggacaGAAGCCATATGACTGCTCGGAGTGTGGGAACAGTTTTACTCGACATAGTGATCTCCAGCGACACCAACgtgttcacacaggagagaaaccatATTGCTGCttacagtgtgggaagagttttactcgACATAGTACGCTCGAAGCACACCAGATCATTCACACAGGACAGAAGTATGGAGTTAAAATCATGCCATTAGAAATTTGAATGTTATTAATGAATTTTACACTGATCAAGTGTgacaaatggattaaaattttGTCAAATGCAGGGAAATGTGTATTGTTTCACTGATGCCAGCTACAGTGAAGGTATTTCATGCTTTCATGCTAGCACATATTCACTCCCAAAGCTGCCCTTACGTGAGGAGGAAAGATCTCAGTGGAGCGCAGATCATCTTGGCACTACAGAGCAAATCCCTGAAATGGTATATGTGCATGCTTTCTTTTGTCAATGTACTAAAACTAACATAGCTACTGACTTCACCTGTTTGGTTCTAGCCATTAGTGTGTTTTAAGAAGTGTCTAAGATACACTTTGGTGTATTTTTCAACTTAACATAAACcctaaattaaaatatacaaaaatgagAATGagcaataataattactggactTGTGCAATGATCAGCCAtatcattaaaaccactgacaggtgaagtgaataacattgattatcttgttacagtggca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU353737 lncRNA upstream 25551 20616808 ~ 20630563 (+) True G298666
TU353730 lncRNA upstream 29912 20601129 ~ 20626202 (+) False G298661
TU353731 lncRNA upstream 29912 20601129 ~ 20626202 (+) True G298661
TU353732 lncRNA upstream 45650 20607977 ~ 20610464 (+) True G298662
TU353734 lncRNA upstream 48318 20546844 ~ 20607796 (+) True G298664
XR_004580089.1 lncRNA downstream 88230 20750884 ~ 20757627 (+) True LOC117599708
XR_004580088.1 lncRNA downstream 88230 20750884 ~ 20757627 (+) False LOC117599708
TU353826 lncRNA downstream 163040 20825694 ~ 20838598 (+) False flrt2
TU353829 lncRNA downstream 163040 20825694 ~ 20838565 (+) False flrt2
TU354113 lncRNA downstream 287187 20949841 ~ 20950068 (+) True G298933
XM_034313531.1 mRNA upstream 105792 20532126 ~ 20550322 (+) True LOC113526589
XM_034313532.1 mRNA upstream 105792 20532126 ~ 20550322 (+) False LOC113526589
XM_034313533.1 mRNA upstream 105792 20532126 ~ 20550322 (+) False LOC113526589
XM_034313605.1 mRNA upstream 177804 20467697 ~ 20478310 (+) True LOC113524742
XM_034313539.1 mRNA upstream 265585 20380834 ~ 20390529 (+) True LOC113524754
XM_026911099.2 mRNA downstream 1428 20664082 ~ 20677515 (+) True ilvbl
XM_034313608.1 mRNA downstream 46839 20709493 ~ 20739766 (+) True LOC113524750
XM_026911121.2 mRNA downstream 163035 20825689 ~ 20838690 (+) True flrt2
XM_034313948.1 mRNA downstream 310770 20973424 ~ 20980564 (+) False LOC113525592
XM_026912151.2 mRNA downstream 314039 20976693 ~ 20980564 (+) True LOC113525592
trnas-uga_11 other upstream 225271 20430762 ~ 20430843 (+) True trnas-uga_11
trnae-uuc_8 other upstream 323973 20332070 ~ 20332141 (+) True trnae-uuc_8
trnar-acg_14 other upstream 327351 20328691 ~ 20328763 (+) True trnar-acg_14
trnah-gug_18 other upstream 329143 20326900 ~ 20326971 (+) True trnah-gug_18
trnah-gug_17 other upstream 333054 20322989 ~ 20323060 (+) True trnah-gug_17
XR_004580149.1 other downstream 359607 21022261 ~ 21023055 (+) True LOC117599778
TU354325 other downstream 670611 21333265 ~ 21336047 (+) True G299088
trnag-ucc_25 other downstream 841549 21504203 ~ 21504274 (+) True trnag-ucc_25
trnag-ucc_26 other downstream 874993 21537647 ~ 21537718 (+) True trnag-ucc_26
trnag-ucc_27 other downstream 918230 21580884 ~ 21580955 (+) True trnag-ucc_27

Expression Profile