ilvbl (ilvbl,LOC107669134,LOC107758073,LOC107753009,LOC107670636)


Basic Information

Item Value
gene id ilvbl
gene name ilvbl,LOC107669134,LOC107758073,LOC107753009,LOC107670636
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 20664082 ~ 20677515 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026911099.2
gtgtgtgttaacctttCACCTGGTTGTTGCGTGTTACTTTGCCTCCACGTCACGGTGGCGCTACACCTGGGATGCGGGAAGCTGCGCACTTCTAGCGGAGCGCTTGGAGAGAAAAGGGGCGGATCCTGTTCACAGGTCAACAACGGCCAGGTTTCGGGTGGTTTATAAGTTGGAGATAAGATGAGTCGTGTGTAACATGTTGAGCAGCAGACAAGTAGGTTGCGTGATGTTGAGAACCGCAGGAGTAGTAAAGTGATCTCCGGATGAGAGGAAGGTAGATTTCTGCAGCACCTTTACTCACAGGTTGTGACACCTGTACCTGGACTGAATTCTCCTAGCTGATAAAAAACATTTCCTGGAAATGGACCTCGGAGTGGTGGTGTGCTGCTGTCTCATTGCAGTGCTGCTGGCTTTGCTGTTTGCTGCTTCCAGACTGGGCTTGCTTTACCAGCTGTTTCATCAGACTGACAGGAAGAGTCCTCGGCACGGAGGCGAGAGTGTGGCAGAGGTGCTTCAGGCTCATGGCATCAAGTTTGTTTTCACGTTGGTTGGTGGACACATCTCTCCAATCCTGGTGGCATGTGAGAAACTGGGGATCCGTATTGTGGACACGCGTCATGAAGCCACAGCTGTGTTTGCTGCGGACGCAGTAGCAAGACTCTCTGGTACAGTAGGTGTGGCTGTAGTAACAGCGGGACCAGGCCTTACTAACACAGTTACGGCAGTGAAGAATGCTCAGATGGCTGAGTCACCTTTGCTTTTGATGGGTGGAGCAGCTTCCACTTTGCTACAGggtcgAGGAGCTTTACAGGACATTGATCAGATGTCCCTTTTCAAGCCACTCTGCAAgttctgtgtgtctgttaggCATGTGAGGGAGATCGTGCCCACTGTGAGAAAGGCCCTGGCTATTGCTCAGTCTGGCACACCAGgtcCTGTATTTATCGAGTTCCCCATAGACACTCTTTATCCATATCATCTCGTAGAGAAAGAGATGTCTCCTAAAAGCACTCCTAAGGGAATCGTTGGAAAAGTTACTGCATGGTACCTTCATAATCATCTAACCAACCTTTTTGCTGGAGCATGGGAAGTAAGGGACCTCTCCCCTCTGCCTGTGCAGGTACCTAAAGCAACAGACGAGGAGGTGCAAAGGTGCATAGAGCTGGTGAGCAGGGCTCAGAAGCCAGTGATCGTGTTAGGCAGCCAGGCAACACTGCCACCAACACCTGTCACAGATGTCAGAAAAGCTCTGGAGTCTTTAGGCATTCCTTGCTTCCTAGGTGGGATGTCCAGAGGGATGCTGGGTAAAGACAGCCTTCTGCATATCAGACAGAACAGAAGAGATGCCCTAAAAGAGGCGGATTTGGTGCTGCTAGCGGgcACGGTGTGTGACTTTAGACTGAGTTACGGCAGAGTGCTGAACAGACGCAGTAAAATTATCGCAGTCAACCGAGACAAGACTCAGCTCCTGAAGAACTCTGACTTGTTCTGGAAGCCCACAGTGGCTATTCAGGGCGACGTTGGTTCCTTCTTGCTGCAGCTGTCTAAGGGCTTGGTGGGACACAAATGTCCTGAAGAATGGATTCAGTGCCTGAAGGAGCgggacaaaacaaaagagaaggcAAACAGAGACAAGGCAAATGAGAAGACAGAGAGGCATCTGAACCCCCTGAGTGTCCTGCACTGTGTGGATGAGCTCCTGGGGGAAGACAGTATCATTGTTGCAGATGGAGGAGACTTTGTAGGCAGTGCTGCTTACATAATGAGACCACGAGGACCCCTGTGCTGGCTGGACCCAGGGGCTTTTGGGACTCTTGGTGTTGGTGGAGGGTTTGCCCTGGGAGCAAAACTCTGTCATCCTGATTCAGAGGTGTGGATTGTTTATGGTGATGGTTCCCTAGGTTACAGCGTGGCGGAATTCGATACTTTTACCAGACACAAGACTCCTGTAATTGCACTAGTGGGAAATGATGCTTGTTGGAGTCAGATCTCCAGGGAACAGGTGCCCCTTCTTGGCAGTAATGTCGCTTGTGGCCTTGCATTTACAGaTTATCACATTGTTGCCAATGGCTATGGTGGCAAAGGTTACCTGATTGGCCGTGAAGACGAGGCGCGTCTTGAAAACATTgttaaaaaagcacaaagagaGTGTAAAGAGGGCAAGGCAGTGTTACTTAATGTACTCATTGGGAAAACCAACTTCAGAGAAGGGTCTATTTCTGTGTAGAGACCCCGTGTGTGGCCCTGACTGAAATCCTGAAAGCCTTTCACCTGCTGGTGCTTCGTGTGTTGAAACACTGTGCATTGAGCATTAAAGACAGGAGTAGACGGGTTAAAAaacagatgaagactggaaatCTGCATGGCTTTAGTGCTGATCATTTCAAAGTCATTACTGTTTTCAGCTAAGGaggtttttcctctttttatgctttattaatatttttttagaaagataTCTTGAAGATTTACTGTTTGTATTAGCTAAAAAGTAAAGACTGGATTTTAAGTAATAACCATTAGATAAAGACTTTTAAGCATTTCAAGATTAAGGGACTTGATTGATGTCTTTAGAttttttcttatattattttgtttgtaataatTAAACTGTTAGTAATATTGAGAGACGAGAAAGAGATATGCAATAATAGTATTAATGCTATTGACAAAAAAGTAGGACTGAATTATGTGTTGAAATATTTTACTCTACACGTGTAAACCAGAATAGTGCACAGCTCACTAAGTTCAGGTTCatgtttaatttcacatttgtaACATCCTAATTAAGTTTAATTAAACAATCAGCAGTTGATTGAGGAAGGAATCGATACATTCGATGATGGacgaaaataataaatgcaaccAGACCATCTTACAGTAGTACATTTGTTCAGATCACAATATTAGTGTTGCAGTTGTACTTAAATACATTGGTCAGTAAGTGAAAGCCTCTCCCAAACCTTTACTGTTCTAGCAATCAGTAATGAAAAGCTTAGTCTATTCTGTGTGAGGGAGAAATAAAGTTTGGAAGCATGAAacattg

Function

symbol description
ilvbl Predicted to enable acetolactate synthase activity and flavin adenine dinucleotide binding activity. Acts upstream of or within embryonic cranial skeleton morphogenesis. Predicted to be located in endoplasmic reticulum membrane. Predicted to be part of acetolactate synthase complex. Orthologous to human ILVBL (ilvB acetolactate synthase like).

NR:

description
PREDICTED: acetolactate synthase-like protein

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component
GO:0030976 thiamine pyrophosphate binding molecular_function
GO:0016740 transferase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K11259 ILVBL; acetolactate synthase-like protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026911099.2 True 3046 mRNA 0.46 15 20664082 20677515

Neighbor

gene id symbol gene type direction distance location
LOC113524745 LOC108258205 coding upstream 1428 20653222 ~ 20662654 (+)
LOC113526589 LOC108261292,LOC108263642,LOC108273545,LOC108268894,LOC108270753,LOC108257668,LOC108270747,LOC108273546 coding upstream 113760 20532126 ~ 20550322 (+)
LOC113524742 LOC108270753,LOC108273219,LOC108274210,LOC108257668 coding upstream 185772 20467697 ~ 20478310 (+)
trnas-uga_11 NA coding upstream 233239 20430762 ~ 20430843 (+)
LOC113524754 psmc1,LOC108443803,LOC108428647 coding upstream 273553 20380834 ~ 20390529 (+)
LOC113524750 NA coding downstream 31978 20709493 ~ 20739766 (+)
LOC113525592 LOC108258243,LOC108262145 coding downstream 295909 20973424 ~ 20980564 (+)
glrx5 glrx5 coding downstream 342625 21020140 ~ 21024532 (+)
LOC117599778 NA coding downstream 344746 21022261 ~ 21023055 (+)
si:dkey-63b1.1 LOC108257663 coding downstream 403570 21081085 ~ 21086417 (+)
G298666 NA non-coding upstream 33519 20616808 ~ 20630563 (+)
G298661 NA non-coding upstream 37880 20601129 ~ 20626202 (+)
G298662 NA non-coding upstream 53618 20607977 ~ 20610464 (+)
G298664 NA non-coding upstream 56286 20546844 ~ 20607796 (+)
G298660 NA non-coding upstream 124215 20539362 ~ 20539867 (+)
LOC117599708 NA non-coding downstream 73369 20750884 ~ 20757627 (+)
G298933 NA non-coding downstream 272326 20949841 ~ 20950068 (+)
G298936 NA non-coding downstream 279960 20957475 ~ 20959579 (+)
G298941 LOC108258028,LOC108262145 non-coding downstream 311970 20989485 ~ 20997752 (+)
G298950 NA non-coding downstream 351848 21029363 ~ 21037912 (+)
LOC117599696 NA other upstream 579585 20082506 ~ 20084497 (+)
G298409 NA other upstream 1117348 19401549 ~ 19546734 (+)
G298379 NA other upstream 1373543 19289985 ~ 19290539 (+)
itpk1a itpk1,LOC108257830 other upstream 1526469 19095952 ~ 19137613 (+)
syndig1l syndig1l,LOC107562693,LOC107659181,LOC107602907,LOC107711667 other upstream 2135883 18495675 ~ 18528199 (+)
flrt2 flrt2,LOC108258011 other downstream 148174 20825689 ~ 20838690 (+)
G299088 zgc:86709,ACTC1,actc1,LOC108414322 other downstream 655750 21333265 ~ 21336047 (+)
psmc6 psmc6,LOC107668141,LOC107549540,LOC107582103 other downstream 1030843 21708358 ~ 21719463 (+)
LOC113525043 NA other downstream 1074051 21751566 ~ 21755344 (+)
LOC113525041 LOC108257678 other downstream 1288810 21966325 ~ 21972928 (+)

Expression


Co-expression Network