RNA id: XR_004580089.1


Basic Information

Item Value
RNA id XR_004580089.1
length 1121
lncRNA type inter_gene
GC content 0.45
exon number 4
gene id LOC117599708
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 20750884 ~ 20757627 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cagaaacCCTCatagtaatggttttaatggttttaatgggaattgtattggtttaaaTAGAAACTCTAATGGTCTCTGTGgctctctactgGCAGCGTGCATCACGGGACACATTCTCTTTGGCATCCTGTAGGAGGTATGAAGTAAAAGTTTTCACCCAAACGTTTCCTGTTAACATTGAGCAAAGTTTGCTCTGTTTTGGGGTATCTGGGTCACATGACCTGGTTCGAGTTACCTGAGATCATTTCCTGACCAGAATCCATCATGGCCGCCGAAGGTGCAGGAGATTCCGAGCACGTGattttggaacattttgtgTGTCTCAGAATACGAGCATGACTTCATTTTGGCACGTGAGGTTTCCTGAGATGTCTGCGTTGTATCGCAGGAAACAGATGATGTGCTCTCATTGTGATGGAGATGGCAATAAGGCCGAGTCGACGCTCACATACTGATGTGTTTAtctgaaaaggaaaagaggTGAAGAGGACACAGCTATGCGAGAGAGCCTTCTGGATTGTCTGGCAGAAGTTATAGTGAATGTAACTCGCACCTCCAGGTGTACAGAGTGACAGACTGAATGGACAATGTTCAGGTTCTCAGTCGTAGAGGCAGCGAGAAGCTGTGGCTAGAAGGCAGTCGCTGCCTGTCATGGCAGTAACCCCAGGATGCGTGGACCAGGGCTCAGGGAAGCTGTAAAGTTGAAGAAGGAGGACCTCCAGGGTCACAGAAAGCTCCACTGGTTCGGAGGAGAGCCAGAAGTGCAAGCTCAGGCCTGGGAGGAGTTTGGAAAGGCggtgaaaaaaactttttggcCTAAAAAGAAGCAGACAAGCAGACATGCTCTACTGGGGATGAAAAGAGCACTCTGAGAATCTCCTTAATCCAGTGGATTTGGTCTCCATTTAGGAGGCAGCGCCAGACATCTCTAGTGTTTtgattctcaagaaggcaacatgatacattaagagccaggatgatcggtgtaaattgttattattttctcttctgggaaacatgtaaatatcttctGTAGCATCTGAAGAGCAgtagtaaatgaaaaaaataagatctttaaacaaaatattaattttcaccgatcatcctgtttataagtttac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU353737 lncRNA upstream 120321 20616808 ~ 20630563 (+) True G298666
TU353730 lncRNA upstream 124682 20601129 ~ 20626202 (+) False G298661
TU353731 lncRNA upstream 124682 20601129 ~ 20626202 (+) True G298661
TU353732 lncRNA upstream 140420 20607977 ~ 20610464 (+) True G298662
TU353734 lncRNA upstream 143088 20546844 ~ 20607796 (+) True G298664
TU353826 lncRNA downstream 68067 20825694 ~ 20838598 (+) False flrt2
TU353829 lncRNA downstream 68067 20825694 ~ 20838565 (+) False flrt2
TU354113 lncRNA downstream 192214 20949841 ~ 20950068 (+) True G298933
TU354116 lncRNA downstream 199848 20957475 ~ 20959579 (+) True G298936
TU354126 lncRNA downstream 231858 20989485 ~ 20997752 (+) False G298941
XM_034313608.1 mRNA upstream 11118 20709493 ~ 20739766 (+) True LOC113524750
XM_026911099.2 mRNA upstream 73369 20664082 ~ 20677515 (+) True ilvbl
XM_034313537.1 mRNA upstream 88230 20656114 ~ 20662654 (+) False LOC113524745
XM_034313538.1 mRNA upstream 88230 20656421 ~ 20662654 (+) False LOC113524745
XM_026911101.2 mRNA upstream 88233 20653222 ~ 20662651 (+) False LOC113524745
XM_026911121.2 mRNA downstream 68062 20825689 ~ 20838690 (+) True flrt2
XM_034313948.1 mRNA downstream 215797 20973424 ~ 20980564 (+) False LOC113525592
XM_026912151.2 mRNA downstream 219066 20976693 ~ 20980564 (+) True LOC113525592
XM_026911169.2 mRNA downstream 262513 21020140 ~ 21024532 (+) True glrx5
XM_026911184.2 mRNA downstream 323458 21081085 ~ 21086417 (+) True si:dkey-63b1.1
trnas-uga_11 other upstream 320041 20430762 ~ 20430843 (+) True trnas-uga_11
trnae-uuc_8 other upstream 418743 20332070 ~ 20332141 (+) True trnae-uuc_8
trnar-acg_14 other upstream 422121 20328691 ~ 20328763 (+) True trnar-acg_14
trnah-gug_18 other upstream 423913 20326900 ~ 20326971 (+) True trnah-gug_18
trnah-gug_17 other upstream 427824 20322989 ~ 20323060 (+) True trnah-gug_17
XR_004580149.1 other downstream 264634 21022261 ~ 21023055 (+) True LOC117599778
TU354325 other downstream 575638 21333265 ~ 21336047 (+) True G299088
trnag-ucc_25 other downstream 746576 21504203 ~ 21504274 (+) True trnag-ucc_25
trnag-ucc_26 other downstream 780020 21537647 ~ 21537718 (+) True trnag-ucc_26
trnag-ucc_27 other downstream 823257 21580884 ~ 21580955 (+) True trnag-ucc_27

Expression Profile