RNA id: XM_034313793.1


Basic Information

Item Value
RNA id XM_034313793.1
length 5220
RNA type mRNA
GC content 0.43
exon number 11
gene id itpk1a
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 19095952 ~ 19137613 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cgagagacagagagacagagagagagagagagagagagagagagagagagagagagagagagagagagagagtatggagCACCGGACTCCTGATAGAGAGACGTGGAGAAGTTAAACGTgtactcagagagagagagagagagagagagagcagtggagGTGTGTACAATTAGAAacagggaaaacacacacacacacacacacacacacacacacacacacacacacacagcagcagtgtTTAAAGAATCAGCAGTGTGGGACTGGACTGAGCAGAAACACGGGATTCCAGCTGAGAGTTTCAGAGATGCAGACGTTTGTGAAAGGGAAGCGAGTGGGCTACTGGCTCAGCGAGAAGAAGATCAAGAAGCTGAACTTCCAGGTTTTCGTTGACATGTGCAGGAAGCGGGGCATTGAGATGGTTCAGCTGGATCTGAGCAGGCCGTTGGAGGATCAGGGCCCGCTGGACGCCATCATCCACAAACTGACGGACCACATCGTGGAAGCTGATCAGAACGTCATCGAGGCTCAGAGACTGGTGCAGAGTGTGCAGGAATACATCGACGCTCACCCAGAGACTGTGATCCTGGATCCTCTTCCTGGTATCCGCACGCTGCTCGACCGCTTCAAGTCCTACACACTGATTCACAAAATGGAGGAGTGTATGAAGGATGAGCGGATCTGCTCTCCTCCGTTCCTGGTGCTCAGCAGTGGGTGTGGCCCTGACATGTTAGAGCAGCTCCGTAAGAGAGACATCACCTTCCCCTTCATGTGTAAGACTCAGGTAGCACACGGAGTGAACTCTCAtgagaTGGCCATCATCTTCAGTGAGGAAGACCTGAAGGACATCACACCCCCCTGCGTGGTACAGAGCTTCATCAACCACAACGCCATGCTCTACAAGGTGTTCGTGGTGGGCGAGGCATACAGTGTGGTGGAGAGACCCTCCATTAGGAACTTCCCCTCTGGACCTACAGaCAGAAGAGCGATATCCTTTAACAGTCATCATGTGTCCAAGCCCGAGTCATCATCAGACCTCACCTCTAGGGAGAACCTGGAGGGTCAGTGCAGGACGCCTAGTGATGATGTCATCCAGAAGATTTCCAGATGTTTGAGACAGACTCTCGGGGTCTCGCTGTTTGGGAttgacatcatcatcaacaaccaGACAGGACAGCACGCCGTCATCGACATCAACGCCTTTCCAGGTTATGAAGGAGTCCCGACGTTCTTCGATGACCTGCTGACTCACCTGACCAGCATCCTGCAGGGCCATGCCCCCCTCCGAGCCAATGGAGTGAGCCCGCTGCCCTGTGGCATGCTGGGAAACGAGAGCGTTGGAAGGGTGATGGACAGCGAGGTGATGAAGAAGGGTCCTCATCAGACTCTGAACTGCTGCAACGCTGAACTGGGTTCCACCTACCACCAGCACCGGCGTTCTCCGCTCGCAGCCCACACCCCCACCCAGTGACCCTGTTTCACCACTTCCTGATCACTcgcatcacttcctgtagtGCCTGTATACGTGTAATGACCAAAGATGTGCTGATTTTTGTGTTAAAggtgaagaagaaaagaacaaatcAACATCCTTGCCAAGTGATTTAGCTGCTCTGCTTTTTCAGGAACTGGACTGAATTTACTGTAACGTGTCTTACGGATGCTtgagaaatcatttttaaaagaaagaggTGGATAAAAATGAGGGAAATGTACAAATTAATAAGAGAAACCAGCTGCTTGAGGAGCACCtagctctttttcttctttttttgcctAGATTACATGTCAGAATAGAAAATtgttttcacacactttcaaaAATGTGTTAGCTGAAGCGttgtttttggcaaaaaaaaaaaaaaaccaacaacaaaaaaacaacaataaaacagcTCACGTGATGCACCtactgtaaccatgacaacactcTCACTAGTAGAGTCGTCCTCGTTAGTATAGGCTAACtagctgcttattattattgttacctgtaataataataaatattagatttcattttcagtaattatTCTAACTACGTTGAGAAGGAGGCAGCTAGTCAGAGCTTTGTATTTTGAGACAGGAAGAGACGAGAAGACGAGCTTCCTGTGCAACTGCTGTACAGTTCAAACTTTGGGACAAGTTCCTCtgagtaacagtaactcatttTTCCTTATGTCATCGCATCACCTCATCATGTATGTTTGTACAgtcaacatttaaataaacgTAAATAAAATAGTTAGCAGGCCAAAGAATGCAACAAACCACTGAGAACAAGAAAACCTTCCGCTAATGAAAACTATTACGTTATGACACGGctgctaataacattttatttagctttattttaacTAGACTGAAACGTTACCTCACAGCACATATGCTCAAATGTACGACTTTTCTGCTTCTTTAGCAGCTGGACCAGGATCATACGTCTCCATGATCCTCAGATGTTCCTCACTGTCTCGAATAATCTGATCACAATCGCTTGCTTTTAGCCAGAAACTTTTAAGAGTCGACTGTTTCACCATCGTCTGATAAACTGCACCATTGTACAGAGACTGAACTCGGGTTCAGCTGCCTCCAGATCCACAAACAAGAGGAAATTTGATCTTTGGAATTGAGTAAAGTAGTATCTGACAGGGTAAGAGGaaattttaattctgtaattgaATAATGTATCTGGattttctgtgcatgtcagGAGAAAGTTCTGCCTATAAGACCAAGCAGAGAGTCCGTCCCTGGAACAAACCCTGTGACTAGCGGCGTTAGCATTATTTAGCCAACGTGTACTTTGCTAGCTTTTTAATTTTCTCAGATAAAAATGGATACTAAGGAAAGTTAAAAACCATTTAGCAAATGACATGAATCTGCTACACCTTAAACCCCTACACCTTAAACCCCTACACATTAAACAGCTACACCTTAAACCCCTACACCTTAAACCCCTACACCTTAAACTCCTACACCTTAAACTCCTACATCTTAAACCCTTACACCTTAAGCCCCTACACCTTAAACTCCTAGACCTTAAACCCCAACACCTTAAACCCCTACATCTTAAACCCTTACACCTTAAATTCCTACACCTTAAACCCCAACACCTTAAACCCCTACACCTTAAATCCCTACACCTTAAACTCCTACATCTTAAACCCCAACACCTTAAACCCCAACACCTTAAACTGCTACACCTTAAACCCCAACACCTTAAACCCCAACACCTTAAACCCCTACACCTTAAATCCCTACACCTTAAACAGCTACACCTTAAACCTCTACATCTTAAACCCCAACACCTTAAACCCCAACACCTTAAACCCTACACCTTAAACCCCAACACCTTAAACCCCTACACCTTAAATCCCTACACCTTAAACCCTACATCTTAAACCCCAACACCTTAAACCCCAACACCTTAAACTGCTACACCTTAAACCCCAACACCTTAAACCCCAACACCTTAAACCCCAACACCTTAAACCCCTACACCTTAAATCCCTACACCTTAAACAGCTACACCTTAAACCCCTACACCTTAAACCCCAACACCTTAAACCCCAATACCTTAAACAGCTACACCTTAAACCCCTACATCTTAAACCCCAACACCTTAAACCCCTACACCTTAAACAGCTACACCTTAAACCCCTACATCTTAAATTCCTACACCTTAAACCCTTACACCTTAAACCCCAACACCTTAAACAGCTACACCTTAAACCCCTACATCTTAAATTCCTACACCTTAAACCCTTACACCTTAAACCCCTACATCTTAAATTCCTACACCTTAAACCCCTACACCTTAAACCCCAACACCTTAAACAGCTACACCTTAAACTCCTACATCTTAAACCCCAACACCTTAAACCCCAACACCTTAAACCCCTACACCTTAAATCCCTACACCTTAAACCCTCTACATCTTAAACCCCAACACCTTAAACAGCTACACCTTAAACCCCTACACCTTAAACAGCTACACCTTAAACCCCTACATCTTAAACCCCAACACCTTAAACCCCAACACCTTATACCCCTACACCTTAAACCCCAACACCTTAAACAGCTACACCTTAAACCCCTACATCTTAAATTCCTACACCTTAAACCCTTACACCTTAAACAGCTACACCTTAAACCCCAACACCTTAAACAGCTACACCTTAAACAGCTACACCTTAAACCCCTACACCTTAAACCCTTACACCTTAAacagcgacttttttttttccttcagcatATCGTCTATGTTAATTTAAAGAGACATGcattactgaataaaaatacatgtagAAAAGATCtttacttaatttaaaaatgatatgtaCTTACATGTTTAGTTTGAAATTTGTATGGCCTTTAAGAGAATATTTTTACTGGACTGGATCATTTCCTGTGTCCTGCAGGATCTTAATTTGCCAGTCACACAGAGTTTTACCGGTCaaatttatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtatactgtatgtacaatgTTACAGTGTTCAGTCATTTATCTTTACTAAGTGCCCGGTTAAAGTCACCGTGAGTTTAAATTAGGATACTAGTTTGTTTACGGTTTAGGCCACTCCCACTTCAGGGTTAAGTCCAGATACAGATACGGATAATTGAAGCACTTAACAGATACAGACGTACAACATgcgtggcattgtgttacacccctaatatatacaatatgtatatattatatgattatattatatattattatgattattatatgaaatatgattgaAATGAACTCATTATGAATTGATAATCAGTTTGCTGATTTATTCAGTAACACTCATCTTCCTCACACTGTCACTTTGTAATTTGTATGAAAGATTTgggtaattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttggagtagTGTGGACAATCAGAACCACTACTCACACACTATCTTTATTCTTTTACGGCTttcaatatgtaaatatgaaaataaggAGATTTTCACTGAGGGGTTTTAAACACTggtgtataattgtgtgtgtgtgtgtgtgtgtgtgtgttatatttgtacatactgtacacactgtgtgtatttgtgtatatgttgtTGTGGCACATTTAAAGAACAGAGGAGACATTTTGACGTGTCCTATTGTGTAGAAATGGAATGAAACGGGTGTGGAGAATAAACACTAGAGTTTAACACCA

Function

GO:

id name namespace
GO:0032957 inositol trisphosphate metabolic process biological_process
GO:0016310 phosphorylation biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005524 ATP binding molecular_function
GO:0052725 inositol-1,3,4-trisphosphate 6-kinase activity molecular_function
GO:0052726 inositol-1,3,4-trisphosphate 5-kinase activity molecular_function
GO:0016853 isomerase activity molecular_function
GO:0047325 inositol tetrakisphosphate 1-kinase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU353063 lncRNA upstream 7539 19087258 ~ 19088413 (+) True G298174
TU353031 lncRNA upstream 27837 19048030 ~ 19068115 (+) False G298151
TU353030 lncRNA upstream 27837 19048135 ~ 19068115 (+) True G298151
TU353027 lncRNA upstream 29007 19002340 ~ 19066945 (+) True G298150
TU353043 lncRNA upstream 36368 19059296 ~ 19059584 (+) True G298163
TU353088 lncRNA downstream 3126 19140739 ~ 19142981 (+) True G298195
TU353111 lncRNA downstream 51288 19188901 ~ 19191553 (+) True G298215
TU353127 lncRNA downstream 78946 19216559 ~ 19217201 (+) True G298230
TU353128 lncRNA downstream 81396 19219009 ~ 19220135 (+) True G298231
TU353134 lncRNA downstream 88704 19226317 ~ 19226706 (+) True G298237
XM_026948157.2 mRNA upstream 8748 19085708 ~ 19087204 (+) True si:dkeyp-55f12.3
XM_034313756.1 mRNA upstream 31509 19038213 ~ 19064443 (+) True btbd7
XM_034313933.1 mRNA upstream 107296 18953582 ~ 18988656 (+) True prima1
XM_026948103.2 mRNA upstream 107296 18953592 ~ 18988656 (+) False prima1
XM_026948096.2 mRNA upstream 158666 18917463 ~ 18937286 (+) True asb2a.1
XM_034313489.1 mRNA downstream 103934 19241547 ~ 19249331 (+) False LOC113547660
XM_026948106.2 mRNA downstream 103935 19241548 ~ 19249331 (+) False LOC113547660
XM_026948107.2 mRNA downstream 103936 19241549 ~ 19249331 (+) True LOC113547660
XM_026948102.2 mRNA downstream 116423 19254036 ~ 19264088 (+) True LOC113547657
XM_034313601.1 mRNA downstream 228393 19366006 ~ 19366943 (+) True LOC113524710
TU352782 other upstream 591689 18495783 ~ 18504263 (+) False syndig1l
TU352440 other upstream 900821 18186109 ~ 18195131 (+) False ino80
XR_004580105.1 other upstream 1158338 17854779 ~ 17937614 (+) False sipa1l1
TU352300 other upstream 1288783 17804219 ~ 17807169 (+) False max
TU351537 other upstream 2283159 16812117 ~ 16812793 (+) True G296863
TU353310 other downstream 152372 19289985 ~ 19290539 (+) True G298379
XR_004580076.1 other downstream 191612 19329225 ~ 19329925 (+) True LOC117599671
TU353352 other downstream 387040 19524653 ~ 19546734 (+) False G298409
LOC113523952 other downstream 408459 19546072 ~ 19547137 (+) True LOC113523952
TU353527 other downstream 944944 20082557 ~ 20083019 (+) False LOC117599696

Expression Profile