LOC113524829


Basic Information

Item Value
gene id LOC113524829
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 21278784 ~ 21279701 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026911183.2
TGTAGAATCAGTGTGTATTCTCAGCAGACGTTcgtttaatattatattataaacatgGACGTGTTCTTTGGAAGCTGGAAATTTGATAAAAGTGAAAATTTTGATGATTACATGAAAGCAATTGGTGTTAATGATGAACTGATAAGCGTCGCAAATGTAGTGAAACCCGTCATCACCATTTCCCAAGAGGAGGAGAGCGTGGTGATTACCACACAAACCGTCATCAGCAAGAAAGAAATCAGGTTCCAACTCGGTGAAGAGTTCGAAGAGAAGAGCATAGATGGCAGGTCTTGCAAAAGTGTTATAAACCTGGAAGGAGAAAAACTCGTCCAGGTGCAGAAGGATGAGAGTAGAGAGATCACGATTGTCCGAGAGATCCAGGATGGGAAACTGATCACGACTCTGACATGCGATGAAGTCACAGCAGTAGTTACATATGAGAAGGTGTAAATGTTGGAGAAACTTCCAGCTCTTTCACTGCTTCTTCATCACTGACCTGCTGCGGGGAAACGTCCTTCAAAAAGAcaagcaagaagaagaagaactgtgAACAGATGCATGAATCCTGAATGTTATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026911183.2 True 579 mRNA 0.41 4 21278784 21279701

Neighbor

gene id symbol gene type direction distance location
LOC113524821 NA coding upstream 19166 21258744 ~ 21259618 (+)
si:dkey-63b1.1 LOC108257663 coding upstream 192367 21081085 ~ 21086417 (+)
glrx5 glrx5 coding upstream 254252 21020140 ~ 21024532 (+)
LOC117599778 NA coding upstream 255729 21022261 ~ 21023055 (+)
LOC113525592 LOC108258243,LOC108262145 coding upstream 298220 20973424 ~ 20980564 (+)
LOC113524820 meis2b,LOC108257683,LOC107582109,LOC107664830,LOC105017579,LOC106571644,LOC107712444 coding downstream 6768 21286469 ~ 21314273 (+)
LOC113524812 NA coding downstream 47670 21327371 ~ 21332656 (+)
LOC113524628 LOC108273545,LOC108270753,LOC108273692,LOC108257668,LOC108273546,LOC108260129,LOC108273691,LOC108264971 coding downstream 139160 21418861 ~ 21448636 (+)
LOC113524832 LOC108273546,LOC108261406,LOC108273545,LOC108257668,LOC108270753,LOC108270747,LOC108273691,LOC108273692 coding downstream 184125 21463826 ~ 21481629 (+)
LOC117599738 LOC101884462,LOC107081104,LOC101885893 coding downstream 226058 21505759 ~ 21510111 (+)
LOC117599745 NA non-coding upstream 12051 21266230 ~ 21266733 (+)
G298979 NA non-coding upstream 78926 21127504 ~ 21199858 (+)
G298958 NA non-coding upstream 195950 21082534 ~ 21082834 (+)
G298957 NA non-coding upstream 196459 21082121 ~ 21082325 (+)
G298954 NA non-coding upstream 205094 21072935 ~ 21073690 (+)
LOC117599740 NA non-coding downstream 102813 21382514 ~ 21410121 (+)
trnag-ucc_25 NA non-coding downstream 224502 21504203 ~ 21504274 (+)
G299182 NA non-coding downstream 266697 21546398 ~ 21684428 (+)
LOC117599746 NA non-coding downstream 303077 21582778 ~ 21583715 (+)
trnag-ucc_28 NA non-coding downstream 321165 21600866 ~ 21600937 (+)
flrt2 flrt2,LOC108258011 other upstream 440094 20825689 ~ 20838690 (+)
LOC117599696 NA other upstream 1194287 20082506 ~ 20084497 (+)
G298409 NA other upstream 1732050 19401549 ~ 19546734 (+)
G298379 NA other upstream 1988245 19289985 ~ 19290539 (+)
itpk1a itpk1,LOC108257830 other upstream 2141171 19095952 ~ 19137613 (+)
G299088 zgc:86709,ACTC1,actc1,LOC108414322 other downstream 53564 21333265 ~ 21336047 (+)
psmc6 psmc6,LOC107668141,LOC107549540,LOC107582103 other downstream 428657 21708358 ~ 21719463 (+)
LOC113525043 NA other downstream 471865 21751566 ~ 21755344 (+)
LOC113525041 LOC108257678 other downstream 686624 21966325 ~ 21972928 (+)

Expression


Co-expression Network