G298958


Basic Information

Item Value
gene id G298958
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 21082534 ~ 21082834 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU354154
gagattgttgtcacatgcagagagttaTCAGTATGTGTCAGATgtttctgcagctcctttaatgttgctgtaggtctcttggcagcctccctggtatgtttttgtcttgtccttttataaattttgaagggacgtcctgttcttggtgatgtcactatggtaccccattttctccacttcttgatgatggtcttcatggtattccatggtacatctaatgcaTTGGAAGTTCTTtcgtacccctctcctgatcgatgcCTTtcgacaagtgagataccatacATGTattttgtaagctctt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU354154 True 301 lncRNA 0.42 1 21082534 21082834

Neighbor

gene id symbol gene type direction distance location
glrx5 glrx5 coding upstream 58002 21020140 ~ 21024532 (+)
LOC117599778 NA coding upstream 59479 21022261 ~ 21023055 (+)
LOC113525592 LOC108258243,LOC108262145 coding upstream 101970 20973424 ~ 20980564 (+)
LOC113524750 NA coding upstream 342768 20709493 ~ 20739766 (+)
ilvbl ilvbl,LOC107669134,LOC107758073,LOC107753009,LOC107670636 coding upstream 405019 20664082 ~ 20677515 (+)
LOC113524821 NA coding downstream 175910 21258744 ~ 21259618 (+)
LOC113524829 NA coding downstream 195950 21278784 ~ 21279701 (+)
LOC113524820 meis2b,LOC108257683,LOC107582109,LOC107664830,LOC105017579,LOC106571644,LOC107712444 coding downstream 203635 21286469 ~ 21314273 (+)
LOC113524812 NA coding downstream 244537 21327371 ~ 21332656 (+)
LOC113524628 LOC108273545,LOC108270753,LOC108273692,LOC108257668,LOC108273546,LOC108260129,LOC108273691,LOC108264971 coding downstream 336027 21418861 ~ 21448636 (+)
G298957 NA non-coding upstream 209 21082121 ~ 21082325 (+)
G298954 NA non-coding upstream 8844 21072935 ~ 21073690 (+)
G298953 NA non-coding upstream 10707 21071430 ~ 21071827 (+)
G298950 NA non-coding upstream 44622 21029363 ~ 21037912 (+)
G298941 LOC108258028,LOC108262145 non-coding upstream 84782 20989485 ~ 20997752 (+)
G298979 NA non-coding downstream 44670 21127504 ~ 21199858 (+)
LOC117599745 NA non-coding downstream 183396 21266230 ~ 21266733 (+)
LOC117599740 NA non-coding downstream 299680 21382514 ~ 21410121 (+)
trnag-ucc_25 NA non-coding downstream 421369 21504203 ~ 21504274 (+)
G299182 NA non-coding downstream 463564 21546398 ~ 21684428 (+)
flrt2 flrt2,LOC108258011 other upstream 243844 20825689 ~ 20838690 (+)
LOC117599696 NA other upstream 998037 20082506 ~ 20084497 (+)
G298409 NA other upstream 1535800 19401549 ~ 19546734 (+)
G298379 NA other upstream 1791995 19289985 ~ 19290539 (+)
itpk1a itpk1,LOC108257830 other upstream 1944921 19095952 ~ 19137613 (+)
G299088 zgc:86709,ACTC1,actc1,LOC108414322 other downstream 250431 21333265 ~ 21336047 (+)
psmc6 psmc6,LOC107668141,LOC107549540,LOC107582103 other downstream 625524 21708358 ~ 21719463 (+)
LOC113525043 NA other downstream 668732 21751566 ~ 21755344 (+)
LOC113525041 LOC108257678 other downstream 883491 21966325 ~ 21972928 (+)

Expression


Co-expression Network