LOC117599738 (LOC101884462,LOC107081104,LOC101885893)


Basic Information

Item Value
gene id LOC117599738
gene name LOC101884462,LOC107081104,LOC101885893
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 21505759 ~ 21510111 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034313704.1
CCAAGTCTCATTTCTGAGTTAAATTAggaaaactgtttaaaatatatataactaacTTGTTCTGACTCGATTTAATGCCCCTGTAATAATTTCTTAGTTtaattgctgtttatttataaaagaaatactTTTACAGGTTTTGCAGATGGCAGTATTTGAGGGTAAAATGGCTTCAGTCatagaaaatgtatataaatatataatataatgatatataaatatcatttcaGAACTGGATATGAGGAAGGTGCTACACAAAGTGAACACCAGAAAAGCATGCGGTCCAAACAACATCCCTGGGCGTGTGATAAAAGTCTGTGCTAACCAACTAGCACCAAGATATCAAACAATACATCAAGTAAatcttaaattatattttccATAAAAACCTGCCTGTGAAACTccttcatattttaataatcctgAATAAATCAGGCAATGTCATGGTCAGCTATAACTCTGAGGACCCCTTTCCCACTTCCTGCTCATTGGGATGCAACAGTAGGACACATGGTCTGGCAAGCATGGCTAGAAACAATCTGTCAGTGAGGAGCAAAGAAGGAGAAATAGGGAGTatcaaagaaagagaagagagaaattaAACAGAGATCCAGAAAGCAGAAGGGAGATTCTAGAGAAGGAAAGACAAAGGTGGAAGAAGAGGGTTCAAGacaaaaaagtgagagaaatggTTGAATTGGACGATCGGGAGCAGAGGTATCGGAGAAGATATTGGAAAAACTAGGAAAAGGTATTTGAGGGAAGTAAAAGCTTTGAAAGAGAAAATCAGGAAGTTAACAAAAGTATGAAATCGACTGAGAAAGCAAAAATGACGAAGAAAGAAGGCTcagaaaatcaaatcaaatggcaaacaaaagagaagaaagaaaaaacgcCAGTAGACTCCCCACAGACAGAAACTGAAAAGATGGTATCAGGAAGCTGACTTAGGAATCCTAATATAAAGAGTCCCGCTGTTCCACAACGTTCTCTGCCGAGAACTTCAGATGAAGAAACAAACTCCTGTGTCACGGAGACAGTCAACTGACAAGGCAACTTGTGGACCACTGACATCCTCAGGCAAGATCCTGAAGAAGTGTCGCTTTCTTCATAGGATTCACCAGTTTGGTTTGACTTACAAGTTAGTGAGAGAAAAGAAGGTTCAAATCCCCAGGTCGCTCTGCGGCCCTACTATGTTACAGCACCAAAGATATCTGATAGGAAGACGTGTCTGTGTGACTATCCTGAACATGCATGCTTAATGCTTCAGGTTCTTAGACCATCAGGTGTTGTGATCTTCACTAAACCAAAGTACAGCTTTCAATTCATTTGTTGCTCTCCAGCAAGTGCAGCCTGCCTTCTTCACACATGTTTACGgcgtttaaacacacactctgctctgaCCCCAGAACAAGGTGGAGTCCATGCTGAATGGAGGCAGTGGGAGAGAGTACAAGAAGAAACAGCTAATGGGATCAACTTCAACATGAAACTTGATTTGCACAGCGGGAGTCTTTCAGAGCTGCTCCATCTATATGAGGAGAAACTGAGAAGTGAGACCACAGCACGTGTGCTTGGTTCACAATCCATCAAAAGCACACAGGAAGTTGATTGAGACTTGCAGTGAGAACACAGTCATCATACACGTTGACTTTTCAGAATCCTGGAAGTGTAGGTGCTCCTCTGAAATTCAAGCTTGCCATTTTGCTCAAAATTTGCCGCAGTTGAAACTTCATACCGGAGTGTGTTCCACTGAGATTTTTGCACAGAGTCAAAGAGACAAGATGCTGCAGCAATTTGGACACAGATGGACCCGGTCCAAAAGATGTTCAGGCAAAATTTCCATTGCTTACCACTGTGCACTTTTGGTCAGATGGTCCCAGAAAGCAGTTTAAAAATGAGAAGAAtgtctttctcctttctgaTGTACCACCAAAAATAGGCTTCTACAGAAGCCTACATGGAACTATTTCCCAGCATCCCACAGCAAGGCTGCTCCAGATGGCATTGGGGGAAACGGTGAAACCAACAGCGGAACGATTGGTTCTGCCAGGGAATGAGGTAACAGATGGAAAACAGTTTTATGAGAAGATCTCAAAAAGTCTGAAAGGTGTTCAGCTGTATTCCATGCACTTCTCACACAACCACTCAAACATCAACGAGAAAAATACACCAGGTGCCCGTTTCAAAAAGGAGGTTAAGTGAAAACTCTGAGTATGTTAACCCTGAAATGTGGGAAACTCTGGGTTTTCCGTTTCAGAAACGGAGGTATCTCAAACCTGAGAAAACAGGGTAAGTCAAGCCAGTTTCTGAAAGAGAGGTAAACTATACTCTGAGTCAGTTACCATGGTAACTTCCTCTGTGAACCTAACCTGGTCAGGAGCAGCTTTTCTTTTGGTCTCCTCCCCTTTTTTAAAGTGGAAGCAGTGTTTAAATacctcattcattctttcagtacattcattcattgcaCATATTTCCGTCTTGCAGACTGTCTAAAAAGTGAGAATGGCATGTCCTTTTGTAGATGCTCCTGTAGATGAGGAGGCTGCATTAATTCGCAGGGAGTTACATTTACGTCGGGAGGATTTTCAGGCCCCGAGTGGATTTTTTGTCATATcctcatgcatttttatttgagcGGTACCATTTTTCTAGACAGTCAATTGAATATATCCATAATCTCACCCATCCTTACATCAGAAACATCAGCCATCGTGGCCGTGCTCTTACATCCGAGCAGATGCTTTGTGTTGCTTTACGTTTCTTTGCAAATGGTAGTTTTCTGTATAATGTGGGGGATGCAGAGCACATTAGTAAGGCCACTGTATGCAGAACAGTAAGGAAAGTGTGCCTCGCTCTCAAACGCTTTCTGCGGATTTCTGTGGTGTTTCCTGGGCACAAACCCCTGAGAGTCATCAAAGAGGAGTTTCACAGGATTGCAGGATTTCCAAATGTGGTCAGATGCATTGATGGCACACATATTCCCATCACTGCACCCTCCGAACATGAAGCTGACTATGTCAACAGGAGGTCTATCCACAGTATTAATGTGCAGATCATATGTGATGCTGCACATATCACAAATGTGGAGGCCAAGTGGCCCGGCTCTGTTCATGACTCACGAATGTATCGTGAGTCGACCCTGAGCAACAGGCTGGAATGTGGAGAGATTGATGGCTTTCTGCCGGGAGATAGGGGTTACCCATGCTAACCAGCACTAATAACCCCTTACCCAGAACCTGAACCAGGCCCCCAGCAGCACTTCAATGTGGCACACTGCAGGACGAGAGCCGGGTGGAGATGACCATAGGCCTGTTGAAATCACGTTTTCAGTGCCTATGTCACCTCAGGGTAACCCCTGAGAGGGCCTGCGACATTATTGTGGCATGTGTTGTTCTCCATAATATTCCCATAATTAGAGGGGAGTGTAGCAGGGTTATGTTATTACACCAGATTATaagttttagttatttattttattttattttatttttaataattatttgttagggggtattttattttgaaagaagGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034313704.1 True 3538 mRNA 0.42 5 21505759 21510111

Neighbor

gene id symbol gene type direction distance location
LOC113524832 LOC108273546,LOC108261406,LOC108273545,LOC108257668,LOC108270753,LOC108270747,LOC108273691,LOC108273692 coding upstream 24130 21463826 ~ 21481629 (+)
LOC113524628 LOC108273545,LOC108270753,LOC108273692,LOC108257668,LOC108273546,LOC108260129,LOC108273691,LOC108264971 coding upstream 57123 21418861 ~ 21448636 (+)
LOC113524812 NA coding upstream 173103 21327371 ~ 21332656 (+)
LOC113524820 meis2b,LOC108257683,LOC107582109,LOC107664830,LOC105017579,LOC106571644,LOC107712444 coding upstream 191486 21286469 ~ 21314273 (+)
LOC113524829 NA coding upstream 226058 21278784 ~ 21279701 (+)
LOC117599737 LOC106576489,LOC106931447 coding downstream 1684 21511795 ~ 21515061 (+)
trnag-ucc_26 NA coding downstream 27536 21537647 ~ 21537718 (+)
trnag-ucc_27 NA coding downstream 70773 21580884 ~ 21580955 (+)
LOC117599739 LOC101884462,LOC107081104,LOC101885893,LOC107084730 coding downstream 97520 21607631 ~ 21610224 (+)
trnag-ucc_29 NA coding downstream 117256 21627367 ~ 21627438 (+)
trnag-ucc_25 NA non-coding upstream 1485 21504203 ~ 21504274 (+)
LOC117599740 NA non-coding upstream 95638 21382514 ~ 21410121 (+)
LOC117599745 NA non-coding upstream 239026 21266230 ~ 21266733 (+)
G298979 NA non-coding upstream 305901 21127504 ~ 21199858 (+)
G298958 NA non-coding upstream 422925 21082534 ~ 21082834 (+)
G299182 NA non-coding downstream 36287 21546398 ~ 21684428 (+)
LOC117599746 NA non-coding downstream 72667 21582778 ~ 21583715 (+)
trnag-ucc_28 NA non-coding downstream 90755 21600866 ~ 21600937 (+)
G299224 NA non-coding downstream 171002 21681113 ~ 22048673 (+)
G299225 NA non-coding downstream 173201 21683312 ~ 21683762 (+)
G299088 zgc:86709,ACTC1,actc1,LOC108414322 other upstream 169712 21333265 ~ 21336047 (+)
flrt2 flrt2,LOC108258011 other upstream 667069 20825689 ~ 20838690 (+)
LOC117599696 NA other upstream 1421262 20082506 ~ 20084497 (+)
G298409 NA other upstream 1959025 19401549 ~ 19546734 (+)
G298379 NA other upstream 2215220 19289985 ~ 19290539 (+)
psmc6 psmc6,LOC107668141,LOC107549540,LOC107582103 other downstream 198247 21708358 ~ 21719463 (+)
LOC113525043 NA other downstream 241455 21751566 ~ 21755344 (+)
LOC113525041 LOC108257678 other downstream 456214 21966325 ~ 21972928 (+)

Expression


Co-expression Network