RNA id: XM_034313704.1


Basic Information

Item Value
RNA id XM_034313704.1
length 3538
RNA type mRNA
GC content 0.42
exon number 5
gene id LOC117599738
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 21505759 ~ 21510111 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCAAGTCTCATTTCTGAGTTAAATTAggaaaactgtttaaaatatatataactaacTTGTTCTGACTCGATTTAATGCCCCTGTAATAATTTCTTAGTTtaattgctgtttatttataaaagaaatactTTTACAGGTTTTGCAGATGGCAGTATTTGAGGGTAAAATGGCTTCAGTCatagaaaatgtatataaatatataatataatgatatataaatatcatttcaGAACTGGATATGAGGAAGGTGCTACACAAAGTGAACACCAGAAAAGCATGCGGTCCAAACAACATCCCTGGGCGTGTGATAAAAGTCTGTGCTAACCAACTAGCACCAAGATATCAAACAATACATCAAGTAAatcttaaattatattttccATAAAAACCTGCCTGTGAAACTccttcatattttaataatcctgAATAAATCAGGCAATGTCATGGTCAGCTATAACTCTGAGGACCCCTTTCCCACTTCCTGCTCATTGGGATGCAACAGTAGGACACATGGTCTGGCAAGCATGGCTAGAAACAATCTGTCAGTGAGGAGCAAAGAAGGAGAAATAGGGAGTatcaaagaaagagaagagagaaattaAACAGAGATCCAGAAAGCAGAAGGGAGATTCTAGAGAAGGAAAGACAAAGGTGGAAGAAGAGGGTTCAAGacaaaaaagtgagagaaatggTTGAATTGGACGATCGGGAGCAGAGGTATCGGAGAAGATATTGGAAAAACTAGGAAAAGGTATTTGAGGGAAGTAAAAGCTTTGAAAGAGAAAATCAGGAAGTTAACAAAAGTATGAAATCGACTGAGAAAGCAAAAATGACGAAGAAAGAAGGCTcagaaaatcaaatcaaatggcaaacaaaagagaagaaagaaaaaacgcCAGTAGACTCCCCACAGACAGAAACTGAAAAGATGGTATCAGGAAGCTGACTTAGGAATCCTAATATAAAGAGTCCCGCTGTTCCACAACGTTCTCTGCCGAGAACTTCAGATGAAGAAACAAACTCCTGTGTCACGGAGACAGTCAACTGACAAGGCAACTTGTGGACCACTGACATCCTCAGGCAAGATCCTGAAGAAGTGTCGCTTTCTTCATAGGATTCACCAGTTTGGTTTGACTTACAAGTTAGTGAGAGAAAAGAAGGTTCAAATCCCCAGGTCGCTCTGCGGCCCTACTATGTTACAGCACCAAAGATATCTGATAGGAAGACGTGTCTGTGTGACTATCCTGAACATGCATGCTTAATGCTTCAGGTTCTTAGACCATCAGGTGTTGTGATCTTCACTAAACCAAAGTACAGCTTTCAATTCATTTGTTGCTCTCCAGCAAGTGCAGCCTGCCTTCTTCACACATGTTTACGgcgtttaaacacacactctgctctgaCCCCAGAACAAGGTGGAGTCCATGCTGAATGGAGGCAGTGGGAGAGAGTACAAGAAGAAACAGCTAATGGGATCAACTTCAACATGAAACTTGATTTGCACAGCGGGAGTCTTTCAGAGCTGCTCCATCTATATGAGGAGAAACTGAGAAGTGAGACCACAGCACGTGTGCTTGGTTCACAATCCATCAAAAGCACACAGGAAGTTGATTGAGACTTGCAGTGAGAACACAGTCATCATACACGTTGACTTTTCAGAATCCTGGAAGTGTAGGTGCTCCTCTGAAATTCAAGCTTGCCATTTTGCTCAAAATTTGCCGCAGTTGAAACTTCATACCGGAGTGTGTTCCACTGAGATTTTTGCACAGAGTCAAAGAGACAAGATGCTGCAGCAATTTGGACACAGATGGACCCGGTCCAAAAGATGTTCAGGCAAAATTTCCATTGCTTACCACTGTGCACTTTTGGTCAGATGGTCCCAGAAAGCAGTTTAAAAATGAGAAGAAtgtctttctcctttctgaTGTACCACCAAAAATAGGCTTCTACAGAAGCCTACATGGAACTATTTCCCAGCATCCCACAGCAAGGCTGCTCCAGATGGCATTGGGGGAAACGGTGAAACCAACAGCGGAACGATTGGTTCTGCCAGGGAATGAGGTAACAGATGGAAAACAGTTTTATGAGAAGATCTCAAAAAGTCTGAAAGGTGTTCAGCTGTATTCCATGCACTTCTCACACAACCACTCAAACATCAACGAGAAAAATACACCAGGTGCCCGTTTCAAAAAGGAGGTTAAGTGAAAACTCTGAGTATGTTAACCCTGAAATGTGGGAAACTCTGGGTTTTCCGTTTCAGAAACGGAGGTATCTCAAACCTGAGAAAACAGGGTAAGTCAAGCCAGTTTCTGAAAGAGAGGTAAACTATACTCTGAGTCAGTTACCATGGTAACTTCCTCTGTGAACCTAACCTGGTCAGGAGCAGCTTTTCTTTTGGTCTCCTCCCCTTTTTTAAAGTGGAAGCAGTGTTTAAATacctcattcattctttcagtacattcattcattgcaCATATTTCCGTCTTGCAGACTGTCTAAAAAGTGAGAATGGCATGTCCTTTTGTAGATGCTCCTGTAGATGAGGAGGCTGCATTAATTCGCAGGGAGTTACATTTACGTCGGGAGGATTTTCAGGCCCCGAGTGGATTTTTTGTCATATcctcatgcatttttatttgagcGGTACCATTTTTCTAGACAGTCAATTGAATATATCCATAATCTCACCCATCCTTACATCAGAAACATCAGCCATCGTGGCCGTGCTCTTACATCCGAGCAGATGCTTTGTGTTGCTTTACGTTTCTTTGCAAATGGTAGTTTTCTGTATAATGTGGGGGATGCAGAGCACATTAGTAAGGCCACTGTATGCAGAACAGTAAGGAAAGTGTGCCTCGCTCTCAAACGCTTTCTGCGGATTTCTGTGGTGTTTCCTGGGCACAAACCCCTGAGAGTCATCAAAGAGGAGTTTCACAGGATTGCAGGATTTCCAAATGTGGTCAGATGCATTGATGGCACACATATTCCCATCACTGCACCCTCCGAACATGAAGCTGACTATGTCAACAGGAGGTCTATCCACAGTATTAATGTGCAGATCATATGTGATGCTGCACATATCACAAATGTGGAGGCCAAGTGGCCCGGCTCTGTTCATGACTCACGAATGTATCGTGAGTCGACCCTGAGCAACAGGCTGGAATGTGGAGAGATTGATGGCTTTCTGCCGGGAGATAGGGGTTACCCATGCTAACCAGCACTAATAACCCCTTACCCAGAACCTGAACCAGGCCCCCAGCAGCACTTCAATGTGGCACACTGCAGGACGAGAGCCGGGTGGAGATGACCATAGGCCTGTTGAAATCACGTTTTCAGTGCCTATGTCACCTCAGGGTAACCCCTGAGAGGGCCTGCGACATTATTGTGGCATGTGTTGTTCTCCATAATATTCCCATAATTAGAGGGGAGTGTAGCAGGGTTATGTTATTACACCAGATTATaagttttagttatttattttattttattttatttttaataattatttgttagggggtattttattttgaaagaagGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU354358 lncRNA upstream 95638 21398197 ~ 21410121 (+) False LOC117599740
TU354446 lncRNA downstream 36287 21546398 ~ 21684428 (+) True G299182
XR_004580117.1 lncRNA downstream 72667 21582778 ~ 21583715 (+) True LOC117599746
TU354491 lncRNA downstream 171002 21681113 ~ 22048673 (+) True G299224
TU354492 lncRNA downstream 173201 21683312 ~ 21683762 (+) True G299225
TU354500 lncRNA downstream 230117 21740228 ~ 21823611 (+) True G299233
XM_034313611.1 mRNA upstream 24130 21463826 ~ 21481629 (+) True LOC113524832
XM_034313676.1 mRNA upstream 57123 21418861 ~ 21448636 (+) True LOC113524628
XM_026911167.2 mRNA upstream 173103 21327371 ~ 21332656 (+) True LOC113524812
XM_034313697.1 mRNA upstream 191486 21286469 ~ 21314273 (+) True LOC113524820
XM_026911183.2 mRNA upstream 226058 21278784 ~ 21279701 (+) True LOC113524829
XM_034313699.1 mRNA downstream 1684 21511795 ~ 21515061 (+) True LOC117599737
XM_034313705.1 mRNA downstream 97520 21607631 ~ 21610224 (+) True LOC117599739
XM_034313701.1 mRNA downstream 198247 21708358 ~ 21719463 (+) True psmc6
XM_034313614.1 mRNA downstream 241455 21751566 ~ 21754785 (+) True LOC113525043
XM_034313615.1 mRNA downstream 271380 21781491 ~ 21806014 (+) True ylpm1
trnag-ucc_25 other upstream 1485 21504203 ~ 21504274 (+) True trnag-ucc_25
TU354325 other upstream 169712 21333265 ~ 21336047 (+) True G299088
XR_004580149.1 other upstream 482704 21022261 ~ 21023055 (+) True LOC117599778
trnas-uga_11 other upstream 1074916 20430762 ~ 20430843 (+) True trnas-uga_11
trnae-uuc_8 other upstream 1173618 20332070 ~ 20332141 (+) True trnae-uuc_8
trnag-ucc_26 other downstream 27536 21537647 ~ 21537718 (+) True trnag-ucc_26
trnag-ucc_27 other downstream 70773 21580884 ~ 21580955 (+) True trnag-ucc_27
trnag-ucc_28 other downstream 90755 21600866 ~ 21600937 (+) True trnag-ucc_28
trnag-ucc_29 other downstream 117256 21627367 ~ 21627438 (+) True trnag-ucc_29
TU354493 other downstream 198253 21708364 ~ 21719418 (+) False psmc6

Expression Profile