RNA id: TU354491


Basic Information

Item Value
RNA id TU354491
length 957
lncRNA type read_through
GC content 0.41
exon number 2
gene id G299224
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 21681113 ~ 22048673 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aGAACATAAACATTCTGAATGTTAAGGAAAAGATTTCAGAAGTGATTAAAGcggaaatgaaataaaatcagtgagTAGAACTGTGATAGAGTGTTATTGATGTTTCATCcttatgtaacacacacacacacacacacacacacacacacacacacacacaaggatatTTTTGAAAGTGTAGTTTGCCTGTGTTTTATCTCTTgtcactgaaaacaaaactttttgaaaaaagCCTCAGAGAAATTTGAAGTCTCTGTTTTCACTGGTTTGGCGTGGACGTGTGGAAAATTGTTTATGAAGATGTGACAGTGTGAACCTGCACacgtctgctgtgtgtgtgtgtgtgtTTTGCCTGTGTTTTATCTCTTgtcactgaaaacaaaactttttgaaaaaagCCTCAGAGAAATTTGAAGTCTCTGTTTTCACTGGTTTGGCGTGGACGTGTGGAAAATTGTTTATGAAGATGTGACAGTGTGAACCTGCACacgtctgctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggttctgtaccgGTGTGGGCGGAGCCTCAGTGTAATAAAGTGAAACAGCACTGAGTGTGAACAAGGAGAAGCGCGAACACTGGACTAAAACATAGCCTGTGTGTGATTGGCCGACACTGATTGATGACGTCATCGTGTTGCTCCTCTTCATCAGAACAGTagttgaaaacacacacacacacacacacacacacacacacacacacacacagagtttataTCTGAGTTTATAAGACTTATTTCACTAccaatatacagtaattattaacaatcagtacagtgtgttctgattggctgagagcagtacagtgtgttctgattggctgagagcagtacagtgtgttctgattggctgagagcagtacagtgtgttctgattggctgagagcagtacagtgtgttctgattggttccttcTTCCCTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580117.1 lncRNA upstream 97398 21582778 ~ 21583715 (+) True LOC117599746
TU354358 lncRNA upstream 270992 21398197 ~ 21410121 (+) False LOC117599740
TU354484 lncRNA downstream 15683 22064356 ~ 22067524 (+) True G299219
TU354485 lncRNA downstream 15683 22064356 ~ 22067800 (+) False G299219
XM_034313705.1 mRNA upstream 70889 21607631 ~ 21610224 (+) True LOC117599739
XM_034313699.1 mRNA upstream 166052 21511795 ~ 21515061 (+) True LOC117599737
XM_034313704.1 mRNA upstream 171002 21505759 ~ 21510111 (+) True LOC117599738
XM_034313611.1 mRNA upstream 199484 21463826 ~ 21481629 (+) True LOC113524832
XM_034313676.1 mRNA upstream 232477 21418861 ~ 21448636 (+) True LOC113524628
trnag-ucc_29 other upstream 53675 21627367 ~ 21627438 (+) True trnag-ucc_29
trnag-ucc_28 other upstream 80176 21600866 ~ 21600937 (+) True trnag-ucc_28
trnag-ucc_27 other upstream 100158 21580884 ~ 21580955 (+) True trnag-ucc_27
trnag-ucc_26 other upstream 143395 21537647 ~ 21537718 (+) True trnag-ucc_26
trnag-ucc_25 other upstream 176839 21504203 ~ 21504274 (+) True trnag-ucc_25

Expression Profile