G275122


Basic Information

Item Value
gene id G275122
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 732929 ~ 750994 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU326034
gactgactgagggagtgagagagagagggagagagtgagggagagagagagagagagagggagtgagggagagagactgactgagtgagtgagtgagtgggagagagagagagagagaggaagagtgtctgaCTCTGACTGTGACTCTGAGGCGGTTTAACTCCGGAACAGACGCAGGGACGGAACCGTCgcctcacacacaccaaaaaaccAAAATTCATGCTCAAGGTgggagctgggtgtgtgtgctgcgGTCATGGCGTGTGTGTCGGAGTTCTACGCAGGGAAGTGTGTGCTGATCACCGGGGCGACGGGCTTCATGGGGAAGGTGTTGGTGGAGAAGCTGCTGCGTTCCTGTCCCGAGGTTAAAGCTCTGTACCTGCTGATCCGCACCAAGCAGGGCCAGAGCTCCCAGCAGAGGATCCACACCATGCTGCAGAGCAAGG
>TU326035
gactgactgagggagtgagagagagagggagagagtgagggagagagagagagagagagggagtgagggagagagactgactgagtgagtgagtgagtgggagagagagagagagagaggagtgagggagagagactgactgagtgagtgagtgggagagagagagagagagagagagtgtctgaCTCTGACTGTGACTCTGAGGCGGTTTAACTCCGGAACAGACGCAGGGACGGAACCGTCgcctcacacacaccaaaaaaccAAAATTCATGCTCAAGGTgggagctgggtgtgtgtgctgcgGTCATGGCGTGTGTGTCGGAGTTCTACGCAGGGAAGTGTGTGCTGATCACCGGGGCGACGGGCTTCATGGGGAAGGTGTTGGTGGAGAAGCTGCTGCGTTCCTGTCCCGAGGTTAAAGCTCTGTACCTGCTGATCCGCACCAAGCAGGGCCAGAGCTCCCAGCAGAGGATCCACACCATGCTGCAGAGCAAGG
>TU326036
gactgactgagggagtgagagagagagggagagagtgagggagagagagagagagagagggagtgagggagagagactgactgagtgagtgagtgagtgggagagagagagagagagaggagtgagggagagagactgactgagtgagtgagtgggagagagagagagtgtctgaCTCTGACTGTGACTCTGAGGCGGTTTAACTCCGGAACAGACGCAGGGACGGAACCGTCgcctcacacacaccaaaaaaccAAAATTCATGCTCAAGGTgggagctgggtgtgtgtgctgcgGTCATGGCGTGTGTGTCGGAGTTCTACGCAGGGAAGTGTGTGCTGATCACCGGGGCGACGGGCTTCATGGGGAAGGTGTTGGTGGAGAAGCTGCTGCGTTCCTGTCCCGAGGTTAAAGCTCTGTACCTGCTGATCCGCACCAAGCAGGGCCAGAGCTCCCAGCAGAGGATCCACACCATGCTGCAGAGCAAGG
>TU326037
gactgactgagggagtgagagagagagggagagagtgagggagagagagagagagagagggagtgagggagagagactgactgagtgagtgagtgagtgggagagagagagagagagaggagtgagggagagagactgactgagtgagtgagtgggagagagagagagagagagagagagtgtctgaCTCTGACTGTGACTCTGAGGCGGTTTAACTCCGGAACAGACGCAGGGACGGAACCGTCgcctcacacacaccaaaaaaccAAAATTCATGCTCAAGGTgggagctgggtgtgtgtgctgcgGTCATGGCGTGTGTGTCGGAGTTCTACGCAGGGAAGTGTGTGCTGATCACCGGGGCGACGGGCTTCATGGGGAAGGTGTTGGTGGAGAAGCTGCTGCGTTCCTGTCCCGAGGTTAAAGCTCTGTACCTGCTGATCCGCACCAAGCAGGGCCAGAGCTCCCAGCAGAGGATCCACACCATGCTGCAGAGCAAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU326034 False 446 TUCP 0.57 3 732929 750994
TU326035 False 499 TUCP 0.57 3 732929 750994
TU326036 False 489 TUCP 0.57 3 732929 750994
TU326037 True 501 TUCP 0.57 3 732929 750994

Neighbor

gene id symbol gene type direction distance location
LOC117599467 cpsf6,LOC108279496,LOC107729149 coding upstream 16358 702044 ~ 716571 (+)
LOC117599421 NA coding upstream 396752 318294 ~ 336177 (+)
LOC117599420 LOC108279481,LOC108262260,LOC108279495 coding upstream 424288 300083 ~ 308641 (+)
LOC117599419 yeats4,LOC107555875,LOC107590554,LOC106609801 coding upstream 440931 289794 ~ 291998 (+)
ccdc107 ccdc107 coding upstream 545340 168604 ~ 187589 (+)
LOC117599423 LOC108261705,LOC108261423,LOC108261555,LOC108261610 coding downstream 27961 778955 ~ 780859 (+)
LOC117599515 NA coding downstream 30251 781245 ~ 782682 (+)
LOC117599501 NA coding downstream 449077 1200071 ~ 1203360 (+)
LOC117599433 LOC108279477,LOC108261384,LOC108261687,LOC108261932 coding downstream 780430 1531424 ~ 1532846 (+)
LOC117599437 NA coding downstream 1874408 2625402 ~ 2628545 (+)
G275117 NA non-coding upstream 35151 697477 ~ 697778 (+)
G275094 LOC108262260 non-coding upstream 106438 610945 ~ 626491 (+)
G275080 NA non-coding upstream 207832 523888 ~ 525097 (+)
G275077 NA non-coding upstream 212426 520071 ~ 520503 (+)
G275075 NA non-coding upstream 215935 514984 ~ 516994 (+)
G275184 NA non-coding downstream 4253 755247 ~ 755943 (+)
G275185 NA non-coding downstream 5020 756014 ~ 825497 (+)
G275186 LOC108279477 non-coding downstream 6425 757419 ~ 828148 (+)
G275187 NA non-coding downstream 7481 758475 ~ 759158 (+)
G275189 NA non-coding downstream 11523 762517 ~ 763078 (+)
kcnc2 kcnc2 other upstream 493385 202190 ~ 239544 (+)
G274944 NA other upstream 586887 143898 ~ 146042 (+)
G274937 LOC107747660 other upstream 594719 136566 ~ 138210 (+)
LOC117599424 LOC108279477,LOC108261384,LOC108261687,LOC108261705,LOC108261555,LOC108261423,LOC108444120,LOC108444126,LOC108444129,LOC108412318 other downstream 63175 814169 ~ 821166 (+)
G275221 LOC108261384,LOC108261423,LOC108279477,LOC108261705,LOC108261555,LOC108261687,LOC108412318,LOC108415949 other downstream 222342 973336 ~ 1019014 (+)
LOC113543470 LOC108261384,LOC108279477,LOC108261423,LOC108261705,LOC108261687,LOC108261555,LOC108261611,LOC108262265,LOC108444126,LOC108412318 other downstream 267379 1018373 ~ 1226905 (+)
LOC117599483 NA other downstream 317089 1068083 ~ 1068578 (+)
LOC117599429 LOC108279477,LOC108261384,LOC108261705,LOC108261932,LOC108261610,LOC108261423,LOC108261687 other downstream 566942 1317936 ~ 1319549 (+)

Expression


Co-expression Network