LOC117599423 (LOC108261705,LOC108261423,LOC108261555,LOC108261610)


Basic Information

Item Value
gene id LOC117599423
gene name LOC108261705,LOC108261423,LOC108261555,LOC108261610
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 778955 ~ 780859 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034312960.1
atgaggtggAGTGTGAGGGGAACGAGACTTCAGCTGAGTGAAGAGGGAGAATGTGGACACCATGAGGACATAGGAGTCGtgtgctcagagtttaaagagatccgactcacggagggctgtgaggggaatctggaagtgttctacaatggaacctggggtaatgtgtgtcacaATCAGATGGAGCTGGAGTCAGAAACAGCAAATATGGTGTGTCAagagctgaactgtggaagTCTCAAGAGTTTGGACTCAGCCAGAGGGAGAGTTGAATCTGCTCCTAATTGGCTGGATCATGTGAAATGTAGGAAACACGACTCTAATCTGTTAAAGTGTCCATCTTCACCCTGGGGACAGAACAACTGTGATAGTCGTAGTGATGAGGTGGTTCATATTACCTGCACAGAAGATGGAACGTCTCTACGTACTCATGGGACCTGCTCTAAATTTCCTCTTCAGAAATATTGCTCAAagcactggtctctcaggctgagtggaggaaagggaagctCTTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034312960.1 True 513 mRNA 0.48 5 778955 780859

Neighbor

gene id symbol gene type direction distance location
LOC117599467 cpsf6,LOC108279496,LOC107729149 coding upstream 62384 702044 ~ 716571 (+)
LOC117599421 NA coding upstream 442778 318294 ~ 336177 (+)
LOC117599420 LOC108279481,LOC108262260,LOC108279495 coding upstream 470314 300083 ~ 308641 (+)
LOC117599419 yeats4,LOC107555875,LOC107590554,LOC106609801 coding upstream 486957 289794 ~ 291998 (+)
ccdc107 ccdc107 coding upstream 591366 168604 ~ 187589 (+)
LOC117599515 NA coding downstream 386 781245 ~ 782682 (+)
LOC117599501 NA coding downstream 419212 1200071 ~ 1203360 (+)
LOC117599433 LOC108279477,LOC108261384,LOC108261687,LOC108261932 coding downstream 750565 1531424 ~ 1532846 (+)
LOC117599437 NA coding downstream 1844543 2625402 ~ 2628545 (+)
LOC113524705 LOC108279477,LOC108261384,LOC108261705,LOC108261423,LOC108261687,LOC108261555,LOC108262265 coding downstream 1929286 2710145 ~ 2724355 (+)
G275189 NA non-coding upstream 15877 762517 ~ 763078 (+)
G275187 NA non-coding upstream 19797 758475 ~ 759158 (+)
G275184 NA non-coding upstream 23012 755247 ~ 755943 (+)
G275123 NA non-coding upstream 30579 748012 ~ 748376 (+)
G275117 NA non-coding upstream 81177 697477 ~ 697778 (+)
G275199 NA non-coding downstream 43561 824420 ~ 850385 (+)
G275217 NA non-coding downstream 195336 976195 ~ 979697 (+)
G275223 LOC108279477,LOC108261611 non-coding downstream 213882 994741 ~ 996447 (+)
G275224 NA non-coding downstream 216036 996895 ~ 1017630 (+)
G275225 LOC108261384,LOC108279477,LOC108261687,LOC108444126,LOC108444120,LOC108412318,LOC108416036,LOC108444135,LOC108261555,LOC108261705 non-coding downstream 238251 1019110 ~ 1019566 (+)
G275122 NA other upstream 27961 732929 ~ 750994 (+)
kcnc2 kcnc2 other upstream 539411 202190 ~ 239544 (+)
G274944 NA other upstream 632913 143898 ~ 146042 (+)
G274937 LOC107747660 other upstream 640745 136566 ~ 138210 (+)
LOC117599424 LOC108279477,LOC108261384,LOC108261687,LOC108261705,LOC108261555,LOC108261423,LOC108444120,LOC108444126,LOC108444129,LOC108412318 other downstream 33310 814169 ~ 821166 (+)
G275221 LOC108261384,LOC108261423,LOC108279477,LOC108261705,LOC108261555,LOC108261687,LOC108412318,LOC108415949 other downstream 192477 973336 ~ 1019014 (+)
LOC113543470 LOC108261384,LOC108279477,LOC108261423,LOC108261705,LOC108261687,LOC108261555,LOC108261611,LOC108262265,LOC108444126,LOC108412318 other downstream 237514 1018373 ~ 1226905 (+)
LOC117599483 NA other downstream 287224 1068083 ~ 1068578 (+)
LOC117599429 LOC108279477,LOC108261384,LOC108261705,LOC108261932,LOC108261610,LOC108261423,LOC108261687 other downstream 537077 1317936 ~ 1319549 (+)

Expression


Co-expression Network