LOC117599420 (LOC108279481,LOC108262260,LOC108279495)


Basic Information

Item Value
gene id LOC117599420
gene name LOC108279481,LOC108262260,LOC108279495
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 300083 ~ 308641 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034312954.1
AGACGCTAACATACTCTGtctctTCTCCAGGTGATCTTTCCTGAACAGAGAGATGAAATCAGCAGAGAAACTCATCATCAtcgtttgttttctgtttcaaggtgttTTGTGTAGAGAATTCTCCATCAGTCTACCAGAGAGTGTAGAAGCTCTGAGAGGACTCTGTGTTCTCATACCCTGCAGTTTTGAGATTAAAGAAGAATTTGATGCAGATTTCCAGAAAGATCGTACAGGAATCTGGTTTAAAGATGGCACTGAccataacaaaaacaaagtcTTTAACTCTAAAGTAACTAAAGAGAACAGGATTGAAGGGGAAATTATAGGAGACCTCCACATGAAGAACTGCACCACCATCTTCTACAACATCAGAGAGAGTGACAGTGGAAGATATTACTTTAGAGTAGAAACTTCAGGAAGACTGAAACACACTTATAGCTCTTCATCAGTAGATATAAGAGTGCAAGaCTCTCCAATCAGCCCCTCAATAACACTGTATAAGGAGGATCAGGGGAAGGTGGAGGACCAAAATGAGGTGGTGGAGGGAACTTCAGTGAGTCTCATTTGCtctgctccagctcctccatGTCTCTTAAAGCCACCCACTTTTACATGGAACTTCCTGTCTGAGGAGAGAAGACAGGAGCAGAACCACAACACCAGCTTCAGTTCCTCTCAGCTGAACTTCAGCGCTACTCACCTGCATCATGGAGTCGATTTCACCTGCACTGCCACCTACCAGCTCCAGAACAAGAACAAATCAGCACAGAGCTCTTTTACACTACATGTTCTGTATGCTCCTAGAAGCACGTCAGTATCAGCATCTCCATCTGTTTCAGTGCTTTTGGGCAGTTCAGTGTCTCTGAGTTGCAGCAGTGATGCAAACCCAGCAGTGCTGATCTACACCTGGTACAGAGAGAACGGAGAGCAGATAGGAACCGGAAACCATCTCACCATCAACACGACTGATTCTACACAGAGTGGTTTATACTACTGTAGAGCTAAAAACCAGCTCGGAGATCACAACTCATCTGTGTACCTGGATGTTCAGCGTGTTTTGTGTAGAGAATTCTCCATCAGTCTACCAGAGAGTGTAGAAGCTCTGAGAGGACTCTGTGTTCTCATACCCTGCAGTTTTGAGATTGAAGAAGAATTTGATGCAGATTTCCAGAAAGATCGTACAGGAATCTGGTTTAAAGACGGCACTAACCATAACAATAACAAAGTCTTTAACTCTAAAGAAACTAAAGAGAACAGGATTGAAGGGGAAATTATAGGAGACCTCCGCATGAAGAACTGCACCACCATCTTCTAcaacatcagagagagagacagtggaaGATATTACTTTAGAGTAGAAACTTCAGGAAGACTGAAACACACTTATAGCTCTTCATCAGTAGATATAAGAGTGCGAGaCTCTCCAATCAGCCCCTCAATAACACTGTATAAGGAGGATCAGGGGAAGGTGGAGGACCAAAATGAGGTGGTGGAGGGAACTTCAGTGAGTCTCATTTGCtctgctccagctcctccatGTCTCTTAAAGCCACCCACTTTTACATGGAACTTCCTGTCTGAGGAGAGAAGACAGGAGCAGAACTACAGCACCAACTTCAGTTCCTCTCAGCTGAACTTCAGCGCTACTCACCTGCATCATGGAGTCAATTTCACCTGCACTGCCACCTACCAGCTCCAGAACAAGAACAAATCAGCACAGAGCTCTCTTACACTACATGTTCTGTATGCTCCTAGAAGCACGTCAGTATCAGCGTCTCCATCTGCTTCAGTGCTTTTGGGCAGTTCAGTGTCTCTGAGTTGCAGCAGTGATGCAAACCCAGCAGTGCTGATCTACACCTGGTACAGAGAGAACGGAGAGCAGATAGGAACCGGAAAACATCTCACCATCAACACGACTGATTCTACACAGAGTGGTTTATACTACTGTAGAGCTGAAAACCAGCTCGGAGATCACAACTCATCTGTGTACCTGGACGttcagtgtgagtacagtgctGGAGTATTGTTAGTGCTAAGTCACACAGCAACATGGATTTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034312954.1 True 2059 mRNA 0.45 8 300083 308641

Neighbor

gene id symbol gene type direction distance location
LOC117599419 yeats4,LOC107555875,LOC107590554,LOC106609801 coding upstream 8085 289794 ~ 291998 (+)
ccdc107 ccdc107 coding upstream 112494 168604 ~ 187589 (+)
LOC117599421 NA coding downstream 9653 318294 ~ 336177 (+)
LOC117599467 cpsf6,LOC108279496,LOC107729149 coding downstream 393403 702044 ~ 716571 (+)
LOC117599423 LOC108261705,LOC108261423,LOC108261555,LOC108261610 coding downstream 470314 778955 ~ 780859 (+)
LOC117599515 NA coding downstream 472604 781245 ~ 782682 (+)
LOC117599501 NA coding downstream 891430 1200071 ~ 1203360 (+)
LOC117599593 NA non-coding upstream 1514 233241 ~ 298569 (+)
G275003 NA non-coding upstream 15238 250550 ~ 284845 (+)
G275002 NA non-coding upstream 19122 247628 ~ 280961 (+)
G274936 NA non-coding upstream 99584 115109 ~ 200499 (+)
G275058 NA non-coding downstream 80359 389000 ~ 412259 (+)
G275059 NA non-coding downstream 100151 408792 ~ 450537 (+)
G275067 NA non-coding downstream 137211 445852 ~ 463071 (+)
G275075 NA non-coding downstream 206343 514984 ~ 516994 (+)
G275077 NA non-coding downstream 211430 520071 ~ 520503 (+)
kcnc2 kcnc2 other upstream 60539 202190 ~ 239544 (+)
G274944 NA other upstream 154041 143898 ~ 146042 (+)
G274937 LOC107747660 other upstream 161873 136566 ~ 138210 (+)
G275122 NA other downstream 424288 732929 ~ 750994 (+)
LOC117599424 LOC108279477,LOC108261384,LOC108261687,LOC108261705,LOC108261555,LOC108261423,LOC108444120,LOC108444126,LOC108444129,LOC108412318 other downstream 505528 814169 ~ 821166 (+)
G275221 LOC108261384,LOC108261423,LOC108279477,LOC108261705,LOC108261555,LOC108261687,LOC108412318,LOC108415949 other downstream 664695 973336 ~ 1019014 (+)
LOC113543470 LOC108261384,LOC108279477,LOC108261423,LOC108261705,LOC108261687,LOC108261555,LOC108261611,LOC108262265,LOC108444126,LOC108412318 other downstream 709732 1018373 ~ 1226905 (+)
LOC117599483 NA other downstream 759442 1068083 ~ 1068578 (+)

Expression


Co-expression Network