G275217


Basic Information

Item Value
gene id G275217
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 976195 ~ 979697 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU326166
cctccaccGGTTCTCTATGTGTTGGGAACGCTGCTCTTCCTGGCCTTAGTGCTTCTGCTGGTACTGTTTTACCAGAACAGAGTGCTCAGGAGAGttgtctctaagaggaggcgtaagactcagcctgaggcagtctatgaggagatcaaccacagacacatcactagaagaagcacgagctccagtcaaagaggaagtctcctctctgaagaacagcattctgggtatgagcaggtggatgatgagcttctctcaggtaaaaaaggccagagtgtgagtttgtctaactccattaactgaa

Function

GO: NA

KEGG:

id description
ko04622 RIG-I-like receptor signaling pathway
ko04623 Cytosolic DNA-sensing pathway
ko05160 Hepatitis C
ko05162 Measles

RNA

RNA id representative length rna type GC content exon number start site end site
TU326166 True 301 lncRNA 0.49 3 976195 979697

Neighbor

gene id symbol gene type direction distance location
LOC117599515 NA coding upstream 193513 781245 ~ 782682 (+)
LOC117599423 LOC108261705,LOC108261423,LOC108261555,LOC108261610 coding upstream 195336 778955 ~ 780859 (+)
LOC117599467 cpsf6,LOC108279496,LOC107729149 coding upstream 259624 702044 ~ 716571 (+)
LOC117599421 NA coding upstream 640018 318294 ~ 336177 (+)
LOC117599420 LOC108279481,LOC108262260,LOC108279495 coding upstream 667554 300083 ~ 308641 (+)
LOC117599501 NA coding downstream 220374 1200071 ~ 1203360 (+)
LOC117599433 LOC108279477,LOC108261384,LOC108261687,LOC108261932 coding downstream 551727 1531424 ~ 1532846 (+)
LOC117599437 NA coding downstream 1645705 2625402 ~ 2628545 (+)
LOC113524705 LOC108279477,LOC108261384,LOC108261705,LOC108261423,LOC108261687,LOC108261555,LOC108262265 coding downstream 1730448 2710145 ~ 2724355 (+)
LOC117599442 NA coding downstream 1752483 2732180 ~ 2754997 (+)
G275199 NA non-coding upstream 125810 824420 ~ 850385 (+)
G275186 LOC108279477 non-coding upstream 148047 757419 ~ 828148 (+)
G275185 NA non-coding upstream 150698 756014 ~ 825497 (+)
G275189 NA non-coding upstream 213117 762517 ~ 763078 (+)
G275187 NA non-coding upstream 217037 758475 ~ 759158 (+)
G275223 LOC108279477,LOC108261611 non-coding downstream 15044 994741 ~ 996447 (+)
G275224 NA non-coding downstream 17198 996895 ~ 1017630 (+)
G275225 LOC108261384,LOC108279477,LOC108261687,LOC108444126,LOC108444120,LOC108412318,LOC108416036,LOC108444135,LOC108261555,LOC108261705 non-coding downstream 39413 1019110 ~ 1019566 (+)
G275229 NA non-coding downstream 73741 1053438 ~ 1077173 (+)
LOC117599497 LOC108261932,LOC108279477,LOC108261554 non-coding downstream 122127 1101824 ~ 1103022 (+)
LOC117599424 LOC108279477,LOC108261384,LOC108261687,LOC108261705,LOC108261555,LOC108261423,LOC108444120,LOC108444126,LOC108444129,LOC108412318 other upstream 155029 814169 ~ 821166 (+)
G275122 NA other upstream 225201 732929 ~ 750994 (+)
kcnc2 kcnc2 other upstream 736651 202190 ~ 239544 (+)
G274944 NA other upstream 830153 143898 ~ 146042 (+)
G274937 LOC107747660 other upstream 837985 136566 ~ 138210 (+)
LOC113543470 LOC108261384,LOC108279477,LOC108261423,LOC108261705,LOC108261687,LOC108261555,LOC108261611,LOC108262265,LOC108444126,LOC108412318 other downstream 38676 1018373 ~ 1226905 (+)
LOC117599483 NA other downstream 88386 1068083 ~ 1068578 (+)
LOC117599429 LOC108279477,LOC108261384,LOC108261705,LOC108261932,LOC108261610,LOC108261423,LOC108261687 other downstream 338239 1317936 ~ 1319549 (+)
LOC117599530 NA other downstream 340052 1319749 ~ 1322328 (+)
G275267 LOC108261611,LOC108261384,LOC108279477 other downstream 358249 1337946 ~ 1529231 (+)

Expression


Co-expression Network