LOC117599530


Basic Information

Item Value
gene id LOC117599530
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 1319749 ~ 1322328 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579943.1
CCACCACCACCAAATCAGTAAGAGCCACTCCAAATCCTACATCACCTGGAGctccatccacccctccactggttctcgttgtgttgggaacgctgctcttcctggccttagtgcttctgctggtactgttttaccagaacagagtgctcaggagagttgtctctaagaggaggcgtaagactcagcctgaggc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579943.1 True 193 ncRNA 0.53 3 1319749 1322328

Neighbor

gene id symbol gene type direction distance location
LOC117599501 NA coding upstream 116389 1200071 ~ 1203360 (+)
LOC117599515 NA coding upstream 537067 781245 ~ 782682 (+)
LOC117599423 LOC108261705,LOC108261423,LOC108261555,LOC108261610 coding upstream 538890 778955 ~ 780859 (+)
LOC117599467 cpsf6,LOC108279496,LOC107729149 coding upstream 603178 702044 ~ 716571 (+)
LOC117599421 NA coding upstream 983572 318294 ~ 336177 (+)
LOC117599433 LOC108279477,LOC108261384,LOC108261687,LOC108261932 coding downstream 209096 1531424 ~ 1532846 (+)
LOC117599437 NA coding downstream 1303074 2625402 ~ 2628545 (+)
LOC113524705 LOC108279477,LOC108261384,LOC108261705,LOC108261423,LOC108261687,LOC108261555,LOC108262265 coding downstream 1387817 2710145 ~ 2724355 (+)
LOC117599442 NA coding downstream 1409852 2732180 ~ 2754997 (+)
nav3 nav3 coding downstream 1515262 2837590 ~ 2944638 (+)
G275261 LOC108279477,LOC108444125,LOC108416439 non-coding upstream 3878 1310067 ~ 1315871 (+)
LOC117599516 NA non-coding upstream 90190 1227864 ~ 1229559 (+)
LOC117599513 LOC108261932,LOC108279477,LOC108261554,LOC108261515,LOC108261610,LOC108262337,LOC108261705 non-coding upstream 119668 1115768 ~ 1200081 (+)
LOC117599474 LOC108279477 non-coding downstream 3139 1325467 ~ 1327358 (+)
G275272 NA non-coding downstream 91084 1413412 ~ 1454126 (+)
LOC117599481 LOC108279477 non-coding downstream 182428 1504756 ~ 1506309 (+)
LOC117599526 NA non-coding downstream 201104 1523432 ~ 1528590 (+)
G275284 LOC108262466,LOC108279477,LOC108261423,LOC108261400,LOC108261705,LOC108261555,LOC108261384,LOC108261611,LOC108261687 non-coding downstream 207297 1529625 ~ 1559101 (+)
LOC117599429 LOC108279477,LOC108261384,LOC108261705,LOC108261932,LOC108261610,LOC108261423,LOC108261687 other upstream 200 1317936 ~ 1319549 (+)
LOC113543470 LOC108261384,LOC108279477,LOC108261423,LOC108261705,LOC108261687,LOC108261555,LOC108261611,LOC108262265,LOC108444126,LOC108412318 other upstream 92844 1018373 ~ 1226905 (+)
LOC117599483 NA other upstream 251171 1068083 ~ 1068578 (+)
G275221 LOC108261384,LOC108261423,LOC108279477,LOC108261705,LOC108261555,LOC108261687,LOC108412318,LOC108415949 other upstream 300735 973336 ~ 1019014 (+)
LOC117599424 LOC108279477,LOC108261384,LOC108261687,LOC108261705,LOC108261555,LOC108261423,LOC108444120,LOC108444126,LOC108444129,LOC108412318 other upstream 498583 814169 ~ 821166 (+)
G275267 LOC108261611,LOC108261384,LOC108279477 other downstream 15618 1337946 ~ 1529231 (+)
LOC117599632 NA other downstream 122129 1444457 ~ 1444563 (+)
G275285 LOC108279477,LOC108261423,LOC108261555,LOC108261705,LOC108261384,LOC108261687,LOC108444120,LOC108415161 other downstream 207515 1529843 ~ 1531055 (+)
LOC117599482 LOC108279477 other downstream 494658 1816986 ~ 1818624 (+)
G275319 LOC108261400,LOC108261423,LOC108279477,LOC108261705,LOC108262649,LOC108261687,LOC108262466 other downstream 705865 2028193 ~ 2030242 (+)

Expression


Co-expression Network