LOC113524705 (LOC108279477,LOC108261384,LOC108261705,LOC108261423,LOC108261687,LOC108261555,LOC108262265)


Basic Information

Item Value
gene id LOC113524705
gene name LOC108279477,LOC108261384,LOC108261705,LOC108261423,LOC108261687,LOC108261555,LOC108262265
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 2710145 ~ 2724355 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034312983.1
ctgggctgtggctccgtgctgaactaccgctcctctccatccaccactgaacacaaacacatgtgtgtaacgggtttcagctgctctgggagtgaagctcatctggggaactgcagcagtgcacaaccTGTCAACTGCGGCTCTggggaacagctgtacatcacctgctcagTCCCGAGGTCCATCAGGCTGGTTGGTTCTGGGGGAGACTGTGCAGGAAGGCTGGAGGTTTTCCACAGCGGCTCGtgggggacagtgtgtgatgactcgtgggatattgaggatgcgcaggtggtgtgcagacagctgcagtgtggagaggccctcagtacccacataccagcctggtttggtcctggaactgggtccatatggctgaatgaggtggagtgtgaggggagcgagacgtccctgtggaactgcagatttcagctgtgtgaagagGGAGAATGTGGGCACCAGAAGGACGTAGGAGTCGtgtgctcagagtttaaagagatccaactcacggagggctgtgaggggaatctggaagtgttctacaatggaacctggggtaatgtgtgtcacaatcagatggatgatgagacagtaaacatggtgtgtcgagagctgaactgtggaagAAGTGTCAGTCTGTCAAACACTGAAGCACGAGTAAAATCTGCTCCTAACTGGCTGGATTATCTGAAGTGTAGGAAACACGACTCTAACCTGTGGCAGTGTCCATCTTCACCCTGGGGACAGAACAGCTGTGATAATCGTGATGAGGTGGCTCGTATTACCTGCACAGatGATGGAAAGTCTCTACATACACAAGAAAAGTGCTCATTTCCCTCTCAGAAACATTGCTCAAagcactggtctctcaggctgagtggaggaaagggaagctgctctgggaggttggaggtgtaTCATAACGCTACGTGGGGCTCCGTTTGTGATGATCAACTGGGCATCAAGTATGCTCAGGTAGGGGAGGGCGTTATTTCTCCTCTAACAGAAAGTGTCCTTTTTGAAGATCAGCATTATGGGTATGAGTATGTGGATGATGTGACTGTCATGTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034312983.1 True 1071 mRNA 0.52 5 2710145 2724355

Neighbor

gene id symbol gene type direction distance location
LOC117599437 NA coding upstream 81600 2625402 ~ 2628545 (+)
LOC117599433 LOC108279477,LOC108261384,LOC108261687,LOC108261932 coding upstream 1177299 1531424 ~ 1532846 (+)
LOC117599501 NA coding upstream 1506785 1200071 ~ 1203360 (+)
LOC117599515 NA coding upstream 1927463 781245 ~ 782682 (+)
LOC117599423 LOC108261705,LOC108261423,LOC108261555,LOC108261610 coding upstream 1929286 778955 ~ 780859 (+)
LOC117599442 NA coding downstream 7825 2732180 ~ 2754997 (+)
nav3 nav3 coding downstream 113235 2837590 ~ 2944638 (+)
syt1a syt1,LOC107694178,LOC107755909,LOC107590640 coding downstream 242244 2966599 ~ 3201217 (+)
myf6 myf6 coding downstream 668805 3393160 ~ 3413821 (+)
myf5 myf5 coding downstream 694481 3418836 ~ 3423562 (+)
LOC117599473 LOC108279477 non-coding upstream 109274 2596444 ~ 2600871 (+)
G275353 LOC108279477 non-coding upstream 350092 2357689 ~ 2360053 (+)
G275344 LOC108279477,LOC108261705,LOC108261555,LOC108261423,LOC108261384,LOC108261687,LOC108412924,LOC108280023,LOC108444120 non-coding upstream 394198 2315636 ~ 2315947 (+)
LOC117599472 LOC108279477 non-coding upstream 518207 2190036 ~ 2191938 (+)
G275298 LOC108261932,LOC108279477,LOC108261554 non-coding upstream 896070 1812102 ~ 1814075 (+)
G275592 NA non-coding downstream 96507 2820862 ~ 2822124 (+)
G275610 NA non-coding downstream 168138 2892493 ~ 2892729 (+)
G275629 NA non-coding downstream 264806 2989161 ~ 2989428 (+)
G275638 NA non-coding downstream 402719 3127074 ~ 3127594 (+)
G275639 NA non-coding downstream 417216 3141571 ~ 3141868 (+)
LOC113525606 LOC108279477,LOC108261384,LOC108261705,LOC108261423,LOC108261687,LOC108261555,LOC108262265,LOC108261932,LOC108261610 other upstream 64756 2633602 ~ 2645389 (+)
G275365 LOC108261611,LOC108261384,LOC108279477,LOC108262118,LOC108261400,LOC108261705,LOC108261423,LOC108262466,LOC108261687 other upstream 77151 2632436 ~ 2632994 (+)
LOC117599502 LOC108261705,LOC108279477,LOC108261610,LOC108261932,LOC108261423,LOC108261555,LOC108261515,LOC108262337,LOC108261554 other upstream 356467 2170002 ~ 2353678 (+)
LOC113543528 LOC108279477,LOC108261384,LOC108261687,LOC108261423,LOC108261705,LOC108261932 other upstream 392260 2316651 ~ 2317885 (+)
LOC117599434 LOC108261611,LOC108261384,LOC108279477,LOC108261423,LOC108262118,LOC108261687,LOC108262466 other upstream 394831 2308693 ~ 2315314 (+)
G275657 NA other downstream 533299 3257654 ~ 3305834 (+)
G276159 NA other downstream 981455 3705810 ~ 3709250 (+)
LOC117599546 NA other downstream 1057855 3782210 ~ 3785627 (+)
ndufb2 ndufb2 other downstream 1189269 3913624 ~ 3988660 (+)
gnai1 gnai1,LOC108279833,LOC107590838,LOC100706147,LOC103382723,LOC106609493 other downstream 1334206 4058561 ~ 4156084 (+)

Expression


Co-expression Network