trnav-cac_4


Basic Information

Item Value
gene id trnav-cac_4
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 2716149 ~ 2716221 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnav-cac_4
gtttctgtagtgtagtggttatcacGTTCGCCTCACACGCGAAAGGTCCCCGGTTCGAAACCGGGCAGAAACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnav-cac_4 True 73 tRNA 0.53 1 2716149 2716221

Neighbor

gene id symbol gene type direction distance location
LOC117597103 NA coding upstream 102085 2607058 ~ 2614064 (+)
LOC117597102 NA coding upstream 105696 2607061 ~ 2610453 (+)
LOC113524012 NA coding upstream 177544 2537272 ~ 2538605 (+)
LOC113524013 NA coding upstream 190607 2524205 ~ 2525542 (+)
LOC117595726 NA coding upstream 212817 2495409 ~ 2503332 (+)
trnav-cac_5 NA coding downstream 24599 2740820 ~ 2740892 (+)
trnav-cac_6 NA coding downstream 25700 2741921 ~ 2741993 (+)
trnav-aac_12 NA coding downstream 34414 2750635 ~ 2750707 (+)
trnav-cac_7 NA coding downstream 38646 2754867 ~ 2754939 (+)
trnav-cac_8 NA coding downstream 56096 2772317 ~ 2772389 (+)
LOC117597104 NA non-coding upstream 96070 2611253 ~ 2620079 (+)
G58433 NA non-coding upstream 127656 2505730 ~ 2588493 (+)
G58403 NA non-coding upstream 405742 2308848 ~ 2310407 (+)
G58359 NA non-coding upstream 480950 2174610 ~ 2235199 (+)
G58332 NA non-coding upstream 612975 2071028 ~ 2103174 (+)
G58473 NA non-coding downstream 71248 2787469 ~ 2802044 (+)
G58500 NA non-coding downstream 256351 2972572 ~ 2973113 (+)
G58503 NA non-coding downstream 344994 3061215 ~ 3062465 (+)
G58864 ptprn2 non-coding downstream 547482 3263703 ~ 3268331 (+)
G58999 NA non-coding downstream 820684 3536905 ~ 3538758 (+)
trnav-aac_11 NA other upstream 599 2715478 ~ 2715550 (+)
trnav-aac_10 NA other upstream 9858 2706219 ~ 2706291 (+)
trnav-aac_9 NA other upstream 21061 2695016 ~ 2695088 (+)
trnav-cac_3 NA other upstream 23680 2692397 ~ 2692469 (+)
trnav-aac_8 NA other upstream 25567 2690510 ~ 2690582 (+)
grpel1 grpel1,LOC107739410,LOC107653296,LOC107590998 other downstream 105090 2821311 ~ 2834509 (+)
wdr97 LOC108268253 other downstream 894871 3611092 ~ 3630110 (+)
LOC113525491 NA other downstream 923609 3639830 ~ 3648060 (+)
LOC113547237 LOC108261305,LOC108268217,LOC108261462,LOC108268211,LOC108261092 other downstream 1012235 3728456 ~ 3736323 (+)
LOC113545588 LOC108261092,LOC108261462,LOC108261482,LOC108268206,LOC108268211,LOC108261305,LOC108268217 other downstream 1023080 3739301 ~ 4061514 (+)

Expression


Co-expression Network