G58503


Basic Information

Item Value
gene id G58503
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 3061215 ~ 3062465 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU69244
tctctgtctgtctctctgtttatctctctgtctgtctctctgtttatctctctgtctgtctctctgtttatctctctgtctgtctctctgtttatctctctgtctgtctctctgtttatctctctgtctgtctctctgtttatctctctgtctgcctctctgtttatctctctgtctgcctctctgtttatctctctgtctgcctctctgtttatctctct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU69244 True 221 lncRNA 0.43 2 3061215 3062465

Neighbor

gene id symbol gene type direction distance location
tada2b tada2b,LOC107591039,LOC106599821,LOC107556062 coding upstream 242171 2811374 ~ 2819044 (+)
trnav-aac_17 NA coding upstream 258996 2802147 ~ 2802219 (+)
trnav-aac_16 NA coding upstream 261787 2799356 ~ 2799428 (+)
trnav-aac_15 NA coding upstream 269822 2791321 ~ 2791393 (+)
trnav-aac_14 NA coding upstream 272417 2788726 ~ 2788798 (+)
LOC113523990 LOC108268232 coding downstream 24524 3086989 ~ 3097607 (+)
LOC113523977 LOC108268236,LOC108261094,LOC108268232,LOC108268231 coding downstream 26383 3088848 ~ 3092537 (+)
LOC117597090 LOC108268231,LOC108268232,LOC108261094 coding downstream 37839 3100304 ~ 3103299 (+)
LOC113523992 LOC108261482,LOC108261096 coding downstream 55426 3117891 ~ 3128766 (+)
LOC113523989 LOC108261094,LOC108268231,LOC108268232,LOC108261393,LOC108268234 coding downstream 70475 3132940 ~ 3138859 (+)
G58500 NA non-coding upstream 88102 2972572 ~ 2973113 (+)
G58473 NA non-coding upstream 259171 2787469 ~ 2802044 (+)
G58458 NA non-coding upstream 278875 2715633 ~ 2782340 (+)
G58465 NA non-coding upstream 333372 2682037 ~ 2727843 (+)
LOC117597104 NA non-coding upstream 441136 2611253 ~ 2620079 (+)
G58864 ptprn2 non-coding downstream 201238 3263703 ~ 3268331 (+)
G58999 NA non-coding downstream 474440 3536905 ~ 3538758 (+)
G59030 NA non-coding downstream 539098 3601563 ~ 3602067 (+)
G59085 NA non-coding downstream 593246 3655711 ~ 3655923 (+)
LOC117597098 NA non-coding downstream 595692 3658157 ~ 3659135 (+)
grpel1 grpel1,LOC107739410,LOC107653296,LOC107590998 other upstream 226706 2821311 ~ 2834509 (+)
trnav-cac_4 NA other upstream 344994 2716149 ~ 2716221 (+)
trnav-aac_11 NA other upstream 345665 2715478 ~ 2715550 (+)
trnav-aac_10 NA other upstream 354924 2706219 ~ 2706291 (+)
trnav-aac_9 NA other upstream 366127 2695016 ~ 2695088 (+)
wdr97 LOC108268253 other downstream 548627 3611092 ~ 3630110 (+)
LOC113525491 NA other downstream 577365 3639830 ~ 3648060 (+)
LOC113547237 LOC108261305,LOC108268217,LOC108261462,LOC108268211,LOC108261092 other downstream 665991 3728456 ~ 3736323 (+)
LOC113545588 LOC108261092,LOC108261462,LOC108261482,LOC108268206,LOC108268211,LOC108261305,LOC108268217 other downstream 676836 3739301 ~ 4061514 (+)
LOC117597054 LOC108261095,LOC108261462,LOC108261092 other downstream 986687 4049152 ~ 4394005 (+)

Expression


Co-expression Network