G58864 (ptprn2)


Basic Information

Item Value
gene id G58864
gene name ptprn2
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 3263703 ~ 3268331 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU69670
GACGACACAGATCCTGATAGGTCGCTGTGGCATCGTTCCCGGTGTCTGTTGCCATGCCAACCAGCTTCTCTTTCAGCTCGTAACCGGAATGGTGGCGCATGCAGAAGAGCGCCCCCGACAGGCCGAGCACCACGGCAACAAACGCCATGGTGACCAGGACCAGAACCAGGAAGTTGCTGGGTTCAAGGCGGCTTTGCTTGACCACGGGGATGTGATTCAGCTTGgac

Function

symbol description
ptprn2 Predicted to enable protein tyrosine phosphatase activity. Predicted to act upstream of or within protein dephosphorylation. Predicted to be located in secretory granule; synapse; and transport vesicle membrane. Predicted to be integral component of membrane. Is expressed in brain. Human ortholog(s) of this gene implicated in prediabetes syndrome and type 1 diabetes mellitus. Orthologous to human PTPRN2 (protein tyrosine phosphatase receptor type N2).

NR:

description
PREDICTED: receptor-type tyrosine-protein phosphatase N2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU69670 True 227 lncRNA 0.59 2 3263703 3268331

Neighbor

gene id symbol gene type direction distance location
dnajb6b dnajb6 coding upstream 75236 3149618 ~ 3188467 (+)
LOC113524001 LOC108261393,LOC108268234,LOC108268232,LOC108261094,LOC108268231 coding upstream 114507 3139120 ~ 3149196 (+)
LOC113523989 LOC108261094,LOC108268231,LOC108268232,LOC108261393,LOC108268234 coding upstream 124844 3132940 ~ 3138859 (+)
LOC113523992 LOC108261482,LOC108261096 coding upstream 134937 3117891 ~ 3128766 (+)
LOC117597090 LOC108268231,LOC108268232,LOC108261094 coding upstream 160404 3100304 ~ 3103299 (+)
LOC117597046 NA coding downstream 233478 3501809 ~ 3520648 (+)
wdr60 NA coding downstream 318294 3586625 ~ 3598514 (+)
LOC113547235 LOC108261462,LOC108261092,LOC108261095,LOC108261482,LOC108268217 coding downstream 704870 3973201 ~ 3980620 (+)
LOC117597091 LOC108261462,LOC108261092 coding downstream 720422 3988753 ~ 4042869 (+)
LOC117597099 NA coding downstream 736822 4005153 ~ 4006341 (+)
G58503 NA non-coding upstream 201238 3061215 ~ 3062465 (+)
G58500 NA non-coding upstream 290590 2972572 ~ 2973113 (+)
G58473 NA non-coding upstream 461659 2787469 ~ 2802044 (+)
G58458 NA non-coding upstream 481363 2715633 ~ 2782340 (+)
G58465 NA non-coding upstream 535860 2682037 ~ 2727843 (+)
G58999 NA non-coding downstream 268574 3536905 ~ 3538758 (+)
G59030 NA non-coding downstream 333232 3601563 ~ 3602067 (+)
G59085 NA non-coding downstream 387380 3655711 ~ 3655923 (+)
LOC117597098 NA non-coding downstream 389826 3658157 ~ 3659135 (+)
G59104 NA non-coding downstream 499507 3767838 ~ 3768186 (+)
grpel1 grpel1,LOC107739410,LOC107653296,LOC107590998 other upstream 429194 2821311 ~ 2834509 (+)
trnav-cac_4 NA other upstream 547482 2716149 ~ 2716221 (+)
trnav-aac_11 NA other upstream 548153 2715478 ~ 2715550 (+)
trnav-aac_10 NA other upstream 557412 2706219 ~ 2706291 (+)
trnav-aac_9 NA other upstream 568615 2695016 ~ 2695088 (+)
wdr97 LOC108268253 other downstream 342761 3611092 ~ 3630110 (+)
LOC113525491 NA other downstream 371499 3639830 ~ 3648060 (+)
LOC113547237 LOC108261305,LOC108268217,LOC108261462,LOC108268211,LOC108261092 other downstream 460125 3728456 ~ 3736323 (+)
LOC113545588 LOC108261092,LOC108261462,LOC108261482,LOC108268206,LOC108268211,LOC108261305,LOC108268217 other downstream 470970 3739301 ~ 4061514 (+)
LOC117597054 LOC108261095,LOC108261462,LOC108261092 other downstream 780821 4049152 ~ 4394005 (+)

Expression


Co-expression Network