LOC117597098


Basic Information

Item Value
gene id LOC117597098
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 3658157 ~ 3659135 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004578032.1
AGAAAAGCAGCAGAAAACCAATCAGACATCAGAGCAGAATCAGAGCCGGTCAGGAGCTGAAGACTCTCAGTCAGGACACACACCACTTCAGGCTGGTGAAGCTGCAGCTGAGAGTGAAGCCACTTACGCACAGGtcatgaagaaaaagaagacaaacagGAAGAATGGTGCTGATGCTGAAGCTGGTGTTAGTGATGTGACTTATGCTGAGATTCAACTAAAaccaatgaaaaatgaaaagagactAAAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004578032.1 True 251 lncRNA 0.45 3 3658157 3659135

Neighbor

gene id symbol gene type direction distance location
wdr60 NA coding upstream 59643 3586625 ~ 3598514 (+)
LOC117597046 NA coding upstream 137509 3501809 ~ 3520648 (+)
dnajb6b dnajb6 coding upstream 469690 3149618 ~ 3188467 (+)
LOC113524001 LOC108261393,LOC108268234,LOC108268232,LOC108261094,LOC108268231 coding upstream 508961 3139120 ~ 3149196 (+)
LOC113523989 LOC108261094,LOC108268231,LOC108268232,LOC108261393,LOC108268234 coding upstream 519298 3132940 ~ 3138859 (+)
LOC113547235 LOC108261462,LOC108261092,LOC108261095,LOC108261482,LOC108268217 coding downstream 314066 3973201 ~ 3980620 (+)
LOC117597091 LOC108261462,LOC108261092 coding downstream 329618 3988753 ~ 4042869 (+)
LOC117597099 NA coding downstream 346018 4005153 ~ 4006341 (+)
LOC117597051 LOC108261462,LOC108261092 coding downstream 431662 4090797 ~ 4117049 (+)
LOC113537671 LOC108261092,LOC108261095,LOC108261482,LOC108261096 coding downstream 656643 4315778 ~ 4334167 (+)
G59085 NA non-coding upstream 2234 3655711 ~ 3655923 (+)
G59030 NA non-coding upstream 56090 3601563 ~ 3602067 (+)
G58999 NA non-coding upstream 119399 3536905 ~ 3538758 (+)
G58864 ptprn2 non-coding upstream 389826 3263703 ~ 3268331 (+)
G58503 NA non-coding upstream 595692 3061215 ~ 3062465 (+)
G59104 NA non-coding downstream 108703 3767838 ~ 3768186 (+)
G59112 NA non-coding downstream 231439 3890574 ~ 3914402 (+)
G59115 NA non-coding downstream 236439 3895574 ~ 3946612 (+)
LOC117597093 NA non-coding downstream 246715 3905850 ~ 3911746 (+)
G59124 NA non-coding downstream 316150 3975285 ~ 3975971 (+)
LOC113525491 NA other upstream 10097 3639830 ~ 3648060 (+)
wdr97 LOC108268253 other upstream 28047 3611092 ~ 3630110 (+)
grpel1 grpel1,LOC107739410,LOC107653296,LOC107590998 other upstream 823648 2821311 ~ 2834509 (+)
trnav-cac_4 NA other upstream 941936 2716149 ~ 2716221 (+)
trnav-aac_11 NA other upstream 942607 2715478 ~ 2715550 (+)
LOC113547237 LOC108261305,LOC108268217,LOC108261462,LOC108268211,LOC108261092 other downstream 69321 3728456 ~ 3736323 (+)
LOC113545588 LOC108261092,LOC108261462,LOC108261482,LOC108268206,LOC108268211,LOC108261305,LOC108268217 other downstream 80166 3739301 ~ 4061514 (+)
LOC117597054 LOC108261095,LOC108261462,LOC108261092 other downstream 390017 4049152 ~ 4394005 (+)
LOC113547236 LOC108261305,LOC108261462,LOC108268217 other downstream 631483 4290618 ~ 4296465 (+)
shrprbck1r LOC108268220,LOC108414001,LOC107739381,LOC107556071,LOC107653293,LOC107590993 other downstream 873786 4532921 ~ 4553038 (+)

Expression


Co-expression Network