RNA id: XR_004578032.1


Basic Information

Item Value
RNA id XR_004578032.1
length 251
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id LOC117597098
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 3658157 ~ 3659135 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGAAAAGCAGCAGAAAACCAATCAGACATCAGAGCAGAATCAGAGCCGGTCAGGAGCTGAAGACTCTCAGTCAGGACACACACCACTTCAGGCTGGTGAAGCTGCAGCTGAGAGTGAAGCCACTTACGCACAGGtcatgaagaaaaagaagacaaacagGAAGAATGGTGCTGATGCTGAAGCTGGTGTTAGTGATGTGACTTATGCTGAGATTCAACTAAAaccaatgaaaaatgaaaagagactAAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69919 lncRNA upstream 2234 3655711 ~ 3655923 (+) True G59085
TU69915 lncRNA upstream 10097 3645658 ~ 3648060 (+) False LOC113525491
TU69857 lncRNA upstream 34600 3623188 ~ 3623557 (+) False wdr97
TU69854 lncRNA upstream 56090 3601563 ~ 3602067 (+) True G59030
TU69821 lncRNA upstream 119399 3536905 ~ 3538758 (+) True G58999
TU69941 lncRNA downstream 108703 3767838 ~ 3768186 (+) True G59104
TU69949 lncRNA downstream 231439 3890574 ~ 3914402 (+) True G59112
TU69952 lncRNA downstream 236439 3895574 ~ 3946612 (+) True G59115
XR_004578022.1 lncRNA downstream 246715 3905850 ~ 3911746 (+) True LOC117597093
TU69954 lncRNA downstream 246752 3905887 ~ 3906965 (+) False LOC117597093
XM_026912021.2 mRNA upstream 10097 3639830 ~ 3648060 (+) True LOC113525491
XM_034303793.1 mRNA upstream 10097 3639830 ~ 3648060 (+) False LOC113525491
XM_034303573.1 mRNA upstream 28047 3611092 ~ 3630110 (+) True wdr97
XM_034303796.1 mRNA upstream 59643 3586625 ~ 3598514 (+) True wdr60
XM_034303555.1 mRNA upstream 137509 3501809 ~ 3520648 (+) True LOC117597046
XM_034303812.1 mRNA downstream 69327 3728462 ~ 3736323 (+) True LOC113547237
XM_034303813.1 mRNA downstream 69327 3728462 ~ 3736323 (+) False LOC113547237
XM_034303575.1 mRNA downstream 80166 3739301 ~ 4061514 (+) True LOC113545588
XM_034303810.1 mRNA downstream 314066 3973201 ~ 3980620 (+) True LOC113547235
XM_034303806.1 mRNA downstream 329618 3988753 ~ 4042869 (+) True LOC117597091
trnav-aac_17 other upstream 855938 2802147 ~ 2802219 (+) True trnav-aac_17
trnav-aac_16 other upstream 858729 2799356 ~ 2799428 (+) True trnav-aac_16
trnav-aac_15 other upstream 866764 2791321 ~ 2791393 (+) True trnav-aac_15
trnav-aac_14 other upstream 869359 2788726 ~ 2788798 (+) True trnav-aac_14
trnav-aac_13 other upstream 876391 2781694 ~ 2781766 (+) True trnav-aac_13
TU69928 other downstream 69321 3728456 ~ 3730348 (+) False LOC113547237
TU69947 other downstream 191288 3850423 ~ 3852567 (+) False LOC113545588
XR_004578033.1 other downstream 346018 4005153 ~ 4006341 (+) True LOC117597099
XR_003404798.2 other downstream 873786 4532921 ~ 4553038 (+) True shrprbck1r
XR_004578071.1 other downstream 991342 4650477 ~ 4653121 (+) True LOC117597167

Expression Profile