RNA id: XM_034303806.1


Basic Information

Item Value
RNA id XM_034303806.1
length 2892
RNA type mRNA
GC content 0.42
exon number 9
gene id LOC117597091
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 3988753 ~ 4042869 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agctcagtccactccctgtgatgctctTGGTGATTTCACTCATACCAGTGGCCCATGCTCAAGCAAAACCCAAACCGACTGTGAGAGTGAATCCTCAGAGCTCCGTCTACACTGGAGACACCATCACTCTGAGCTGTGAGCTGCAGCAGTCGACTGGATGGGAGTTTCTCTGGTACAAATATAATCCTACGTTACAGATTCTGAGCAGtgaacaagcacacacacttaatgtGACAGTCGATAATGCAGGAGAAACAGTGTACCAGTGTCGCGCACACAGGAGAAACTATGATTACTACACAGAGCTCAGTGATCCTGTCAGGATTACAGCGAGAGcaAGACCTAAACCAGTGGCATCCATAAATCCTGATAaacaggtgttcagtggagaggCCGTCACTCTGAGATGTGACATACAGGATGAAAGTGTCTCTAGCTGGCAGTACAGCTGGAATAAAGATGCTTCACACAGTCCTGTCAGTagtgaacaggtgtacaggatCAGTGGTGTTGAAGTGACCCACACAGGTAAATACACCTGtagaggagcagagagaggaggcTCACGCTCCTCACACttcagtgatgctgttacactgactgtatcagAGAGACAGctggagacactgagtgtaTCTCCACAGAGCTGGCTGACTGAAGGAGACTCAGTGACTCTAAGCTGTGAGGTTATAGACTCCTCTACAGACTGGACATTCAGCTGGTACACAACTGTTCCCTACAGAGACGGCttaactcaaataaaaaataatcatggcTATAGCATGTATGTGGAGCTCctctcagacagcagcagaggatcTGGAGGCTCCTACACTCTCAATCCTGCTGCTCTGAATCACACAGGAGTTTATAtgtgcagaggagagagaggagaaccagccgttcacacacagtacagcaaTCCACAGCCACTATGGATCACTGgtGAATCTCCTCCAGTCTCTCTGATCATCAATCccagcagaactcaacactttaCTAAAGattctctctcactgagctgtGAGGACCAGAGTAACTCTACTGGATGGACAGTGAgacgatacacacacagtgagagagtgttaGATTGTTCATGGTGGGGATTAGTTACAGGATCTACATGTAAAATCAGCTTCCtctccacatcacacactggagTTTACTGGTGTGAGTCTGAATCTGGAGAAAACAGTAATCCTGTCAACATCACAGTGCATGATGGTGATGTGATCCTGGAGAGTCCTGTCCATCCTCTGACTGAGGGACATCCTCTGACTCTACGCTGTTTATATCGCAACACTGATTCCTCAAACCTCCGagctgatttctgtaaagatggaTCAGTTCTACAGACACAGACTACAGGAGAGATGATCATCCGAACTGTCTCAAAGTCAGATGAaggtttctaccactgtaaacacccagagagaggagagtcactgaAAAGCTGGCTCTCAGTTAGAGcGTCAGGTCCATCACGTGTAGAAGCTCCATTCTCCGTGCTCATGCTGATCAGTAGTGTAGTGACGGCCTCTCCGTATCTGCTGGTGACCATCATTCTGCTGGTCAAATGTTACAGAGCTCGAGCTCACACTGATGAAGAGAGAATTGAGAATGCAGTCATAGAGGAGTGAGCAAAGTTCATCTAACAAAAGAGGatgcatttactgtaaaaataatttcataatttctttttctttcggGCTTTGCGaggttttaaaataatactgatttgtcattttaatgtcatgctgttatttgcTCAGCATCTCATAGACCCCCTCGTTGTTCTGACTGGATTTGTTTAGCTAAAGCCTGCAAACCTCCTCATGAGGTGAAAGTTACCGTGTGTGTCGTTTCTAATAAAGCTTACAGGCTGCTAATGCAAAACTTTTGATGTATTGTCTGAGGGTTGAGCTGTGCTTCTGCAAAACAACATCTGACGTGGGAAATAAATGTGTCTGCTATTGGACTGATTTTAATCTCAACATGGTGACCTGCACATTAAAACCTCAAAACATTTCATCTAACTGTAACGAGGTTTAAGCAAGCACAGGAATCTGTGCAAAATGGTTGCTTTAAGTCCAGAAAATATAGAATGATACTCTACTCTGTCAGTTGCTGGACCTCTGTTAACACAAATCACACCATCGTGGGGTTTTATTCTGATGGAAGGGAATGAGAGGAAACAGGATTAAGTGCAAGATGGAAACTAGCATCGTTGGGAGGAAACTAAAGACTAGTAGGTTTGTTCTGTGCTAGGACATGCACTCCTGAGATTTGCTTAATATACAGAGAGTGTATATGGTATAAACTGCATTATTTCAGaatgaaaatgtgcagtgtAATATTTTCCAGTGTAGGTTGTATTTTCTGTATAGATGACTACAGTCAGAGTGTTTGGTGAAAAGCCCAGTGTTACTGGAGTTAAAGTAAGTGAAGCTTACTATGTATGCAATATAAAAACAAGTTCATTGACTGTTATCTGAAATATGGTGGGGAACtaatattgtgttttgtgtcttcTCAGTATTAGTTCTaccactactgtatttgtactgCTGTGTTTTCTTCTATTTCTGTGTGAGATTAGCTCTAGTTGAATTACGAGGAGTAGACTTCCAATCTCAGTTAGACACTGTTGATAGTTTTGTTTGACTTTTCAGCTGTGTGAACTTTAATTGTAGTTGTGTGAGGAGATTTGTGGATGAAATGTTTTGAtctattaaataaatgcatcattaTCAGTTCACTGAATTATTTAACCTGGTAGCAATAATGTATCATATGAAGTACAAGTAATACACTGAGAAATCTCTTGTGTCTTTGTCAATATCAGCATTTTTAGAATTTTGTATTTTGATACAATGATGTACTGGagataaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69961 lncRNA upstream 12782 3975285 ~ 3975971 (+) True G59124
TU69952 lncRNA upstream 42141 3895574 ~ 3946612 (+) True G59115
TU69949 lncRNA upstream 74351 3890574 ~ 3914402 (+) True G59112
XR_004578022.1 lncRNA upstream 77007 3905850 ~ 3911746 (+) True LOC117597093
TU69954 lncRNA upstream 81788 3905887 ~ 3906965 (+) False LOC117597093
TU69978 lncRNA downstream 4170 4047039 ~ 4051248 (+) True G59136
TU69979 lncRNA downstream 6283 4049152 ~ 4386806 (+) False LOC117597054
TU69982 lncRNA downstream 11441 4054310 ~ 4055230 (+) True G59139
TU69985 lncRNA downstream 15405 4058274 ~ 4060841 (+) False LOC113545588
XR_004578031.1 lncRNA downstream 74917 4117786 ~ 4118590 (+) True LOC117597097
XM_034303810.1 mRNA upstream 8133 3973201 ~ 3980620 (+) True LOC113547235
XM_034303812.1 mRNA upstream 252430 3728462 ~ 3736323 (+) True LOC113547237
XM_034303813.1 mRNA upstream 252430 3728462 ~ 3736323 (+) False LOC113547237
XM_026912021.2 mRNA upstream 340693 3639830 ~ 3648060 (+) True LOC113525491
XM_034303793.1 mRNA upstream 340693 3639830 ~ 3648060 (+) False LOC113525491
XM_034303582.1 mRNA downstream 47928 4090797 ~ 4117049 (+) True LOC117597051
XM_034303816.1 mRNA downstream 247749 4290618 ~ 4295137 (+) True LOC113547236
XM_034303799.1 mRNA downstream 272909 4315778 ~ 4334167 (+) True LOC113537671
XM_034303589.1 mRNA downstream 328688 4371557 ~ 4394005 (+) True LOC117597054
XM_034303590.1 mRNA downstream 352616 4395485 ~ 4408386 (+) True LOC117597055
TU69947 other upstream 136186 3850423 ~ 3852567 (+) False LOC113545588
TU69928 other upstream 258405 3728456 ~ 3730348 (+) False LOC113547237
trnav-aac_17 other upstream 1186534 2802147 ~ 2802219 (+) True trnav-aac_17
trnav-aac_16 other upstream 1189325 2799356 ~ 2799428 (+) True trnav-aac_16
trnav-aac_15 other upstream 1197360 2791321 ~ 2791393 (+) True trnav-aac_15
XR_003404798.2 other downstream 490052 4532921 ~ 4553038 (+) True shrprbck1r
XR_004578071.1 other downstream 607608 4650477 ~ 4653121 (+) True LOC117597167
TU70239 other downstream 664573 4707442 ~ 4708398 (+) True G59366
TU70376 other downstream 912266 4955135 ~ 4955462 (+) False LOC113547245
TU70397 other downstream 931326 4974195 ~ 5008133 (+) True G59492

Expression Profile