RNA id: XM_034303582.1


Basic Information

Item Value
RNA id XM_034303582.1
length 1285
RNA type mRNA
GC content 0.47
exon number 7
gene id LOC117597051
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 4090797 ~ 4117049 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGAGtttaacacacaccaaacctccCTGCATCAGTCAGTCATTAGAGGGACAGGATGGAGCTCAGTCCACtccctgtgatgctctTGTTGGTTTCACTTACACCAGTGGCCCATGCTCAAGATGCTTCACACAGTCCTGTCAGTagtgaacaggtgtacaggatCAGTGGTGTTGAAGTGACCCACGCAGGTAAATACACCTGTAGAGGAGCAGAGAGAAGAGGCTCACGCTCCTCACACttcagtgatgctgttacactgactgtATCAGAGAGACCACGGGCAGTACTGAGTGTATCTCCACAGAGCTGGCTGACTGAAGGAGACTCAGTGACTCTAAGCTGTGAGGTTACAGACTCCTATACAGACTGGACATTCAGCTGGTACACAACTGTTCCCTACAGAGACGGCTTAActcaaataaaacataatcgTGGCTATAGCATGTATGTGGAGCTCctctcagacagcagcagaggatcTGGAGGCTCCTACACTCTCAGTCCTGCTGCTCTGAATCACACAGGAGTTTATAtgtgcagaggagagagaggagaaccagcctttcacacacagtacagcaaTCCACAGCCACTATGGATCACTGgtGAATCTCCTCCAGTCTCTCTGATCATCAATCccagcagaactcaacactttaCTAaagactctctctcactgagctgtGAGGACCAGAGTAACTCTACTGGATGGACAGTGAgacgatacacacacagtgagagagtgttaCATTGTTTATGGTGGGGATTAGTTACAGGATCTACATGTAAAATCAGCTTCCTCTCCACATCCTACACTGGAGTTTACTGGTGTGAGTCTGAATCAGGAGAAAACAGTAATCCTGTCAACATCACAGTGCATGATGGTGATGTGATCCTGGAGAGTCCTGTCCATCCTGTGACTGAGGGACATCCTCTGACTCTACGCTGTTTATATCGCAACACAAATTCCTCAAACCTCCGagctgatttctgtaaagatggaTCAGTTCTACAGACACAGACTACAGGAGAGATGATCATCCGAACTGTCTCAAAATCAGATGAaggtttctaccactgtaaacacccagagagaggagagtcactgaAAAGCTGGCTCTCAGTCAGAGtCTCAGGTTCTAGATCCGGTGGTGGAACAGTAGGAGTGGCTGTGGGTTTGGGAATTTTGTTCATCGCTTTACTGATCTTAATGATCCTGCTGTGGgcctacaaaagaaaaaaaggtctgATAACTGCTTTAGCTATGTTATGTAGAATATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69985 lncRNA upstream 29956 4058274 ~ 4060841 (+) False LOC113545588
TU69982 lncRNA upstream 35567 4054310 ~ 4055230 (+) True G59139
TU69978 lncRNA upstream 39549 4047039 ~ 4051248 (+) True G59136
TU69961 lncRNA upstream 114826 3975285 ~ 3975971 (+) True G59124
TU69952 lncRNA upstream 144185 3895574 ~ 3946612 (+) True G59115
XR_004578031.1 lncRNA downstream 737 4117786 ~ 4118590 (+) True LOC117597097
TU70002 lncRNA downstream 176240 4293289 ~ 4296465 (+) False LOC113547236
TU70012 lncRNA downstream 255072 4372121 ~ 4372557 (+) False LOC117597054
TU70170 lncRNA downstream 438346 4555395 ~ 4555599 (+) True G59304
TU70208 lncRNA downstream 546562 4663611 ~ 4664466 (+) True G59338
XM_034303575.1 mRNA upstream 29283 3739301 ~ 4061514 (+) True LOC113545588
XM_034303806.1 mRNA upstream 47928 3988753 ~ 4042869 (+) True LOC117597091
XM_034303807.1 mRNA upstream 47928 4012307 ~ 4042869 (+) False LOC117597091
XM_034303810.1 mRNA upstream 110177 3973201 ~ 3980620 (+) True LOC113547235
XM_034303812.1 mRNA upstream 354474 3728462 ~ 3736323 (+) True LOC113547237
XM_034303816.1 mRNA downstream 173569 4290618 ~ 4295137 (+) True LOC113547236
XM_034303799.1 mRNA downstream 198729 4315778 ~ 4334167 (+) True LOC113537671
XM_034303589.1 mRNA downstream 254508 4371557 ~ 4394005 (+) True LOC117597054
XM_034303590.1 mRNA downstream 278436 4395485 ~ 4408386 (+) True LOC117597055
XM_034303591.1 mRNA downstream 300500 4417549 ~ 4431006 (+) True LOC117597057
XR_004578033.1 other upstream 84456 4005153 ~ 4006341 (+) True LOC117597099
TU69947 other upstream 238230 3850423 ~ 3852567 (+) False LOC113545588
TU69928 other upstream 360449 3728456 ~ 3730348 (+) False LOC113547237
trnav-aac_17 other upstream 1288578 2802147 ~ 2802219 (+) True trnav-aac_17
trnav-aac_16 other upstream 1291369 2799356 ~ 2799428 (+) True trnav-aac_16
XR_003404798.2 other downstream 415872 4532921 ~ 4553038 (+) True shrprbck1r
XR_004578071.1 other downstream 533428 4650477 ~ 4653121 (+) True LOC117597167
TU70239 other downstream 590393 4707442 ~ 4708398 (+) True G59366
TU70376 other downstream 838086 4955135 ~ 4955462 (+) False LOC113547245
TU70397 other downstream 857146 4974195 ~ 5008133 (+) True G59492

Expression Profile