RNA id: TU69952


Basic Information

Item Value
RNA id TU69952
length 293
lncRNA type intronic
GC content 0.38
exon number 2
gene id G59115
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 3895574 ~ 3946612 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AATAATAACAGGAATTATCTGTAAAGATATTAGAATACtttacagtaaatatgtttatggTTATTTACTGCCATTTGCTATTTGCTCctagtaaattactgtaaatattacagtaaatgttttacagtgaggaacaggtgcacacaatcaGGGAATCACATCAGCGGGGGACATTATGCCTCCTCACCACCAGATGTCACTGTTGCCTGAGTATTAGTCTAGCtctatcacaccacctccaggTCACTTCCTCATTGTAGAGTATATTAGGCCAGCACATGGTCTTATACATG

Function

GO:

id name namespace
GO:0038023 signaling receptor activity molecular_function
GO:0060089 molecular transducer activity molecular_function
GO:0004888 transmembrane signaling receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69941 lncRNA upstream 127388 3767838 ~ 3768186 (+) True G59104
XR_004578032.1 lncRNA upstream 236439 3658157 ~ 3659135 (+) True LOC117597098
TU69919 lncRNA upstream 239651 3655711 ~ 3655923 (+) True G59085
TU69915 lncRNA upstream 247514 3645658 ~ 3648060 (+) False LOC113525491
TU69857 lncRNA upstream 272017 3623188 ~ 3623557 (+) False wdr97
TU69961 lncRNA downstream 28673 3975285 ~ 3975971 (+) True G59124
TU69978 lncRNA downstream 100427 4047039 ~ 4051248 (+) True G59136
TU69979 lncRNA downstream 102540 4049152 ~ 4386806 (+) False LOC117597054
TU69982 lncRNA downstream 107698 4054310 ~ 4055230 (+) True G59139
TU69985 lncRNA downstream 111662 4058274 ~ 4060841 (+) False LOC113545588
XM_034303812.1 mRNA upstream 159251 3728462 ~ 3736323 (+) True LOC113547237
XM_034303813.1 mRNA upstream 159251 3728462 ~ 3736323 (+) False LOC113547237
XM_026912021.2 mRNA upstream 247514 3639830 ~ 3648060 (+) True LOC113525491
XM_034303793.1 mRNA upstream 247514 3639830 ~ 3648060 (+) False LOC113525491
XM_034303573.1 mRNA upstream 265464 3611092 ~ 3630110 (+) True wdr97
XM_034303810.1 mRNA downstream 26589 3973201 ~ 3980620 (+) True LOC113547235
XM_034303806.1 mRNA downstream 42141 3988753 ~ 4042869 (+) True LOC117597091
XM_034303807.1 mRNA downstream 65695 4012307 ~ 4042869 (+) False LOC117597091
XM_034303582.1 mRNA downstream 144185 4090797 ~ 4117049 (+) True LOC117597051
XM_034303816.1 mRNA downstream 344006 4290618 ~ 4295137 (+) True LOC113547236
TU69947 other upstream 43007 3850423 ~ 3852567 (+) False LOC113545588
TU69928 other upstream 165226 3728456 ~ 3730348 (+) False LOC113547237
trnav-aac_17 other upstream 1093355 2802147 ~ 2802219 (+) True trnav-aac_17
trnav-aac_16 other upstream 1096146 2799356 ~ 2799428 (+) True trnav-aac_16
trnav-aac_15 other upstream 1104181 2791321 ~ 2791393 (+) True trnav-aac_15
XR_004578033.1 other downstream 58541 4005153 ~ 4006341 (+) True LOC117597099
XR_003404798.2 other downstream 586309 4532921 ~ 4553038 (+) True shrprbck1r
XR_004578071.1 other downstream 703865 4650477 ~ 4653121 (+) True LOC117597167
TU70239 other downstream 760830 4707442 ~ 4708398 (+) True G59366
TU70376 other downstream 1008523 4955135 ~ 4955462 (+) False LOC113547245

Expression Profile