RNA id: XM_034303573.1


Basic Information

Item Value
RNA id XM_034303573.1
length 4750
RNA type mRNA
GC content 0.54
exon number 21
gene id wdr97
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 3611092 ~ 3630110 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGGTGCACTCACACGTCGGTCCCCGCGTCCTCACCCACGGCCTGCGTCACGTCTCCCACGTCCCCTGTGAGGAGGAAGTGACTCTCATGTCATGTGGCGTAGAAGAAGACGGTTTCCTGAGTCTCCACCGCAGCGGGCGCGTCAGGTTCTACACCGCAGACGGGTGTGTGAGGGAAGCCCCCGGCCGCTCCGCCGTGCCGTTCCAGGGCGTCGCCTTCACGCGGATCCCGGGCAGGCTGGTGGGGTGGGGAGGCGGCGAGACGCTCACGCTGCTGGACACGGAGTTAACGCCGCTCGCTCGCGCCCAGGAGACGCTCGACATCAgagtgtgtcagACGTTAGAAGGCTCTCGGGAGCTGGTCACCGCTGGAGCcgggaacgtgtgtgtgtggagtctgGGTCACATGGTGTGTCGTGTGCGGGTGGTGGACGGGTtcgagagggagtgtgtgttcacacagCTGGCTCTGGTTCCTGCTGCAGCTCAGAAACCTCCTCGAGCTCTCGCAGTGTGTGGGAGATCAGTGACTGTCGTGGATCTGAGAGAGGGACGCGTGCTGGAGCACAAAACCAACCTCCACCGacgTGAGATCACGGCGTTGGCGTACTGCCCCCTGCAGGACGTCGTGGTCACTGCGTCCAAAGACGTGACCATGAGGGTGTGGGGGTCGGACTGGGAGCTGCTCACGGCGTTCGTTGGCCACACAGCTGTGGTCACGTCCCTGCTGTTGTGTCCCCTCTCTGGTCTGCTGCTTTCCTCCTCTCTGGACTCAACACTGCGCTACTGGAGTCTACAGATCGGTGACCAGGTGAAGATCGTGACTCCGCCCACTAGTTACGCCCCGCCCCTTTCACTAGGCGGTCCCAGCTCCACGTCcaccttcttctccttctccaaaGCCGGCGTTGACTTCTGGACCTTCGACAGCCTCTACGAGCTTCACTGCAAGCTCAGTAGAGACTCAGTCTTCAGCCCTGTTCATCAAATACTAGCCACGCCCTCTGGCCCGCACTTCCCCGCTCGTGTCATTTGTGTCCATGGCGACGGTGTTGTCACGCTCATGGCTGCAGGGACGGGGGCGGTGCTAACGGCGTTCCGGTCCAGAGGGAGAGTCAGGTGTGCTGATTACTGCCTCtacaaagaggtgttgatgatACTGACTGATGAAGGCGCAGTGATCAAAGCCAGCACGCTGACCAATCCGGGGACTCGGCTGGATACATGGACCAATAGGGAAAGTGGGCGGGGTGAAGCGTGCTGCATGGCGCTGTATAATCACGTAGCCGATGAAGAAGCAGCGCTGAAGGAGTGGAAGGAACtgcaggaggagagaggagagaaaccGAGGGTCCGAAAACAGCTGGAGGAGGGCaagaacaggtGTCTGGTCGTGCTTGGTCATCGCAGTGggtgtgtcagtgtgatgcAGATGCATTCCTGGCGTGTTCAGTACAAAATCTCCGCCCACAATGGGCAAGACGTCACCAGCATACAGGCTTACCCAGACTGCAACTACCTCCTTACTgccgGTGAGGATAACTCGGTGCTGCTGTGGAGAGTGTTTCCGTACGCGGAGGACTGCTTGAGCGCGCAGACGAGTGTGTTTTGCGCTCACACTCCGGTGTGTGTGTCGCTGCTCGACTCCCAGCTGGCCATCGGCCTTCAACAGCAGCACAGCGCCACCTACAGCGTGGTGCAGCTcgacctgcacacacacacaccacctcccacacacacacgctgtgaCCATCCGCCTGAGCACGACCACTGCAGTGCaatcacagggttgtgtgtgtgtccaaatcTGCGTGTGTTTGCCTCGTGCAGTCAGGACGGTACACTGCGCCTCTGGGACGAGGAGAACCACCTGCTCAGgaccctggagctgaaCGCTGAGCCGGAGTGTGTGCAGTTCAGTGGAGTAGGAGGACAGCTGCTGCTGGGAATCAGAGGAGATGTTTACAGAATCCACTGCACACACCTACTGCCTCCAGAGTTCCagacacagCTGCTGTGTAACGAGGATCTGTATGAGCCTGTTCCTGATCTGCCCATCGCTTGCACTATTAGCAGGGCTGAGAGCTCCCGCATCAGTGATGCAGAATATCCCAAGAAACAGGAGCAGACCAAAGACTCAgagttgGAGTGTCTGCTGGAGCGAAATCGAGAcctgtgttcacttcagtgcgGAGAAACACACAGCAGGAGGAAACCGAGCAGCACTCCACACACCAAGAGAGAGGCTTTTAAGCGCTATATACAGCTCCTGTACAATCCACCACTACAGATTagtttCCCGGATGAAGATGACTTCGACCTGCACGCTGCTCTCTTTCCTCCGAAACCATCCGAACTGCGACCTTTGACCCCTCCAACACTGCGTGAGGGCTTCTTTCCAAACCGGAGCCTGGCCAAGAAACCTGACGCAGCACACACGCAgGAAGGCGTGCCGTCGCGCCCCCCTACTGCCTCGCTCGGCTTCGTCCCGAATTCAGTGCTGGTGGGGCAGATTTGGCCTGACGAGGTGGTGCAGAACGCTGTTCCCTCGACACCGTGGACACTCTGGGACGGATACACACACGACTCGGAGGAGGAATATAGTCTTGCAGTGGAGGAAGACTTCAACTCCTTCATGTACCTCCTAGAAACATCACccaaagccccgccccctcccgTGACTCCGCCCCCAGAGGAACCCTTGCCAGAAAAACCAAAATTCACACAGAAGCGACTGAGGCCCCTCCCTCCTATTAAACCAACTCCGCCCCCAGCACCGCCCCCTCCTGTTCGCACGCCACAGCTGCCCGACTTCCTCAAACAGTTCCTGCACGAGGAGTGGTTCCACACCATGTACCCCGACCCGGGgtgtatcCCCGAGTCCCTGAGCCTGACTGAGTTCTTTGCTCAGCTGCTGGACTTCCTGAAGCATTGTGTTGTGAATCAGAAGCTGTGTGTCCTCAAAGCCATCATCACACTGCACAAACAAAactctctcaacacacacaccatcacacacggCCTGCTGGACTCACTGCACGCCTGCCTGCACAAAGACATGtcagataTGGAGCAGCGCTTTGTGGTGGAGTTGCTGCATTTCTTGGTGTGTGTGAATCCTCACAGCTACGACGTCACAGTGGAGATACTCGTCCTGCTAGCAGATAAAGAGCTGAGATTAGAAGATGTAGCAGTGTGTATGCTGCAGGCTCTGGGAGTGGACGACGCTCCGCAGTGGCTCCGTCCTCAGGCGGAGTCCTGGGACCGCGAGGCGCAGAAACACGCGGAGCCTCGGCGATGTCTCAGAGAGCTGGCGCACCACTGGCTCAACAGCTGGACGGCAAAATACAGAATACATAAGAGTGCTGGAAAAAAGAGTGAGCTCTCGTCTCTGGTAATCACGCCCTCAGAAGTTCTGCGTTTTTTCTGCTGGGTGCAAAAAGAGGCGCAGGTTCAACCACCAGCAGACTCAAGCAGGAAAGATACCGTTCGGctggacacacacacctacagGTGGCAAGCGGTTCATCGTCTGGGCGAGATGAACACCATGATGCGTGTACGAGAACCTCAAGGATTGTGGCTGCCTCCGCTGACGTCCAGGCCGCTGCTGACGGGTTTCACACGTCTGCTGTCTCTCCCGCTGCCTCGAGTCACTTCCTCTTCACTCCCGCTCTCTCTGGAGGCGCACTGTCTCAAACAGGCGCCGCTGCAGCGCTACTTCCTGCTGGAGCGATCCTACGTCCAGTTCTACAGATAAAACGCTCCTCCACACGTCAGAGcgcttttcatttcactgtccAGTTAAAAACCTGCTGAACAACTAGCTGTAGtttctcattcattcactaaGCAAACGTTTCTCCAAACAGCCGCATTCAGAGTCGGCGAATGAAGTCCAAAAGTTACGTCGGTTGAGGAACATTGTGTGTACTCGACTCTGGACAATTTAAacatgaacaataaaaaaagttcATTGTAATTATTACACTAATCACTGCAAGCCTggtttaacaaaatggcttccactctCATTATACAGCAGCgtatagaatagcacttgatccagcacatcggattatttatttatacaaaccAAGGTCATGaaatctgtaatgtgtgtgctgGTTGCAGCTGTCAGATTGCTCCTCACTCAAACTGACAACAAATCACGTACAGAAAATATGCTTAATTTAATCACACGTAAACGATTGACGCTGCGTGCAAATCTCTCGCGTAACTACTGGACTTTAATCTGTGGTTATATCTCGGGTCTCAGTAACACTATGCAGTAGTGTTTCAGTATTACGTCCTCACGACGAGGCtttaacccgactctgaatgtGAGTTAGAACTGATGCACGGCACTGAGAAGCTGACGCTTGATGATTTTACACCAAGGCACATCAGCGGCTCTCTGGCAGAACAACTTCCTGCTCAACAGCGCAGAACCTTCAGCTACCACGGACCCCCTGCTCCCAGATGTGccgttttattttctctttccaggttaatatataaaaataacacattcGGTGAAGGACACAACACTTCAACTTTGCACCATTGTGTTGctgttttgtctgaaaaatcTCTCCCAGAGACAAAAATCGCACAAGAGCACGACATTACGTTTTTGTAAGAAATGCtttggtttgtatttattgaAAAGCAGAAATACAGGATAAGAGTATGCTATGGTGAAGTTAAGATCCAGTCATGATGTCACAcgcaggatgaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69854 lncRNA upstream 9025 3601563 ~ 3602067 (+) True G59030
TU69821 lncRNA upstream 72334 3536905 ~ 3538758 (+) True G58999
TU69670 lncRNA upstream 342761 3263703 ~ 3268331 (+) True G58864
TU69244 lncRNA upstream 548627 3061215 ~ 3062465 (+) True G58503
TU69241 lncRNA upstream 637979 2972572 ~ 2973113 (+) True G58500
TU69915 lncRNA downstream 15548 3645658 ~ 3648060 (+) False LOC113525491
TU69919 lncRNA downstream 25601 3655711 ~ 3655923 (+) True G59085
XR_004578032.1 lncRNA downstream 28047 3658157 ~ 3659135 (+) True LOC117597098
TU69941 lncRNA downstream 137728 3767838 ~ 3768186 (+) True G59104
TU69949 lncRNA downstream 260464 3890574 ~ 3914402 (+) True G59112
XM_034303796.1 mRNA upstream 12578 3586625 ~ 3598514 (+) True wdr60
XM_034303555.1 mRNA upstream 90444 3501809 ~ 3520648 (+) True LOC117597046
XM_026910107.2 mRNA upstream 422625 3149618 ~ 3188467 (+) True dnajb6b
XM_026910108.2 mRNA upstream 440590 3149618 ~ 3170502 (+) False dnajb6b
XM_026910117.2 mRNA upstream 461896 3139120 ~ 3149196 (+) False LOC113524001
XM_026912021.2 mRNA downstream 9720 3639830 ~ 3648060 (+) True LOC113525491
XM_034303793.1 mRNA downstream 9720 3639830 ~ 3648060 (+) False LOC113525491
XM_034303812.1 mRNA downstream 98352 3728462 ~ 3736323 (+) True LOC113547237
XM_034303813.1 mRNA downstream 98352 3728462 ~ 3736323 (+) False LOC113547237
XM_034303575.1 mRNA downstream 109191 3739301 ~ 4061514 (+) True LOC113545588
trnav-aac_17 other upstream 808873 2802147 ~ 2802219 (+) True trnav-aac_17
trnav-aac_16 other upstream 811664 2799356 ~ 2799428 (+) True trnav-aac_16
trnav-aac_15 other upstream 819699 2791321 ~ 2791393 (+) True trnav-aac_15
trnav-aac_14 other upstream 822294 2788726 ~ 2788798 (+) True trnav-aac_14
trnav-aac_13 other upstream 829326 2781694 ~ 2781766 (+) True trnav-aac_13
TU69928 other downstream 98346 3728456 ~ 3730348 (+) False LOC113547237
TU69947 other downstream 220313 3850423 ~ 3852567 (+) False LOC113545588
XR_004578033.1 other downstream 375043 4005153 ~ 4006341 (+) True LOC117597099
XR_003404798.2 other downstream 902811 4532921 ~ 4553038 (+) True shrprbck1r
XR_004578071.1 other downstream 1020367 4650477 ~ 4653121 (+) True LOC117597167

Expression Profile