RNA id: TU69961


Basic Information

Item Value
RNA id TU69961
length 206
lncRNA type read_through
GC content 0.47
exon number 2
gene id G59124
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 3975285 ~ 3975971 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctgtcagcagtcacatcatcaataaacaccagtgagcctgttccattggcagccatacatgcccatgccataacactgcctccaccatgtttgacacatgatgtggtatactttggatcatgagctgttcctttctttcgccatgagatctccttggacttcatattggtagctccagtcgaacagctgccaaatgccaactcaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69952 lncRNA upstream 28673 3895574 ~ 3946612 (+) True G59115
TU69949 lncRNA upstream 60883 3890574 ~ 3914402 (+) True G59112
XR_004578022.1 lncRNA upstream 63539 3905850 ~ 3911746 (+) True LOC117597093
TU69954 lncRNA upstream 68320 3905887 ~ 3906965 (+) False LOC117597093
TU69941 lncRNA upstream 207099 3767838 ~ 3768186 (+) True G59104
TU69978 lncRNA downstream 71068 4047039 ~ 4051248 (+) True G59136
TU69979 lncRNA downstream 73181 4049152 ~ 4386806 (+) False LOC117597054
TU69982 lncRNA downstream 78339 4054310 ~ 4055230 (+) True G59139
TU69985 lncRNA downstream 82303 4058274 ~ 4060841 (+) False LOC113545588
XR_004578031.1 lncRNA downstream 141815 4117786 ~ 4118590 (+) True LOC117597097
XM_034303812.1 mRNA upstream 238962 3728462 ~ 3736323 (+) True LOC113547237
XM_034303813.1 mRNA upstream 238962 3728462 ~ 3736323 (+) False LOC113547237
XM_026912021.2 mRNA upstream 327225 3639830 ~ 3648060 (+) True LOC113525491
XM_034303793.1 mRNA upstream 327225 3639830 ~ 3648060 (+) False LOC113525491
XM_034303573.1 mRNA upstream 345175 3611092 ~ 3630110 (+) True wdr97
XM_034303806.1 mRNA downstream 12782 3988753 ~ 4042869 (+) True LOC117597091
XM_034303807.1 mRNA downstream 36336 4012307 ~ 4042869 (+) False LOC117597091
XM_034303582.1 mRNA downstream 114826 4090797 ~ 4117049 (+) True LOC117597051
XM_034303816.1 mRNA downstream 314647 4290618 ~ 4295137 (+) True LOC113547236
XM_034303799.1 mRNA downstream 339807 4315778 ~ 4334167 (+) True LOC113537671
TU69947 other upstream 122718 3850423 ~ 3852567 (+) False LOC113545588
TU69928 other upstream 244937 3728456 ~ 3730348 (+) False LOC113547237
trnav-aac_17 other upstream 1173066 2802147 ~ 2802219 (+) True trnav-aac_17
trnav-aac_16 other upstream 1175857 2799356 ~ 2799428 (+) True trnav-aac_16
trnav-aac_15 other upstream 1183892 2791321 ~ 2791393 (+) True trnav-aac_15
XR_004578033.1 other downstream 29182 4005153 ~ 4006341 (+) True LOC117597099
XR_003404798.2 other downstream 556950 4532921 ~ 4553038 (+) True shrprbck1r
XR_004578071.1 other downstream 674506 4650477 ~ 4653121 (+) True LOC117597167
TU70239 other downstream 731471 4707442 ~ 4708398 (+) True G59366
TU70376 other downstream 979164 4955135 ~ 4955462 (+) False LOC113547245

Expression Profile