RNA id: TU69954


Basic Information

Item Value
RNA id TU69954
length 229
lncRNA type intronic
GC content 0.41
exon number 3
gene id LOC117597093
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 3905850 ~ 3911746 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGACGGCTTAAGCAGTGCATGAGAGACGGATCCAATAGTGTATCATCCTGAGTTAAATCCATTATCTACGGTTCGGGATGATCGCAGATTGTACGTCGTTGCACGTCACATCTGAGAGTAACATGCTCTCCAATGAACACATGTGTATCAGGCTTTATGGACACCACAGCTTTAGGACTCCCTATAAAACATTCTGTTGTTAATAAACCTTACATAAAGTAATTCCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69941 lncRNA upstream 137701 3767838 ~ 3768186 (+) True G59104
XR_004578032.1 lncRNA upstream 246752 3658157 ~ 3659135 (+) True LOC117597098
TU69919 lncRNA upstream 249964 3655711 ~ 3655923 (+) True G59085
TU69915 lncRNA upstream 257827 3645658 ~ 3648060 (+) False LOC113525491
TU69857 lncRNA upstream 282330 3623188 ~ 3623557 (+) False wdr97
TU69961 lncRNA downstream 68320 3975285 ~ 3975971 (+) True G59124
TU69978 lncRNA downstream 140074 4047039 ~ 4051248 (+) True G59136
TU69979 lncRNA downstream 142187 4049152 ~ 4386806 (+) False LOC117597054
TU69982 lncRNA downstream 147345 4054310 ~ 4055230 (+) True G59139
TU69985 lncRNA downstream 151309 4058274 ~ 4060841 (+) False LOC113545588
XM_034303812.1 mRNA upstream 169564 3728462 ~ 3736323 (+) True LOC113547237
XM_034303813.1 mRNA upstream 169564 3728462 ~ 3736323 (+) False LOC113547237
XM_026912021.2 mRNA upstream 257827 3639830 ~ 3648060 (+) True LOC113525491
XM_034303793.1 mRNA upstream 257827 3639830 ~ 3648060 (+) False LOC113525491
XM_034303573.1 mRNA upstream 275777 3611092 ~ 3630110 (+) True wdr97
XM_034303810.1 mRNA downstream 66236 3973201 ~ 3980620 (+) True LOC113547235
XM_034303806.1 mRNA downstream 81788 3988753 ~ 4042869 (+) True LOC117597091
XM_034303807.1 mRNA downstream 105342 4012307 ~ 4042869 (+) False LOC117597091
XM_034303582.1 mRNA downstream 183832 4090797 ~ 4117049 (+) True LOC117597051
XM_034303816.1 mRNA downstream 383653 4290618 ~ 4295137 (+) True LOC113547236
TU69947 other upstream 53320 3850423 ~ 3852567 (+) False LOC113545588
TU69928 other upstream 175539 3728456 ~ 3730348 (+) False LOC113547237
trnav-aac_17 other upstream 1103668 2802147 ~ 2802219 (+) True trnav-aac_17
trnav-aac_16 other upstream 1106459 2799356 ~ 2799428 (+) True trnav-aac_16
trnav-aac_15 other upstream 1114494 2791321 ~ 2791393 (+) True trnav-aac_15
XR_004578033.1 other downstream 98188 4005153 ~ 4006341 (+) True LOC117597099
XR_003404798.2 other downstream 625956 4532921 ~ 4553038 (+) True shrprbck1r
XR_004578071.1 other downstream 743512 4650477 ~ 4653121 (+) True LOC117597167
TU70239 other downstream 800477 4707442 ~ 4708398 (+) True G59366
TU70376 other downstream 1048170 4955135 ~ 4955462 (+) False LOC113547245

Expression Profile