RNA id: XR_004578031.1


Basic Information

Item Value
RNA id XR_004578031.1
length 251
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id LOC117597097
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 4117786 ~ 4118590 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGGAAAGCAGCAGAAAACCAATCAGACATCAGAGCAGAATCAGAGCCGGTCAGGAGCTGAAGACTCTCAGTCAGGATACACACCACTTCAGGCTGGTGAAGCTGCAGCTGAGAGTGAAGCCGCTTACGCACAGGtcatgaagaaaaagaagagaaacaggAACAATGGTGCTGATGCTGAAGCTGGTGTTAGTGATGTTACTTATGCTGAGCTTGAACTAAAACCAATGAAAAAAGCAAAGAGAATAAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69985 lncRNA upstream 56945 4058274 ~ 4060841 (+) False LOC113545588
TU69982 lncRNA upstream 62556 4054310 ~ 4055230 (+) True G59139
TU69978 lncRNA upstream 66538 4047039 ~ 4051248 (+) True G59136
TU69961 lncRNA upstream 141815 3975285 ~ 3975971 (+) True G59124
XR_004578022.1 lncRNA upstream 206040 3905850 ~ 3911746 (+) True LOC117597093
TU70002 lncRNA downstream 174699 4293289 ~ 4296465 (+) False LOC113547236
TU70012 lncRNA downstream 253531 4372121 ~ 4372557 (+) False LOC117597054
TU70170 lncRNA downstream 436805 4555395 ~ 4555599 (+) True G59304
TU70208 lncRNA downstream 545021 4663611 ~ 4664466 (+) True G59338
TU70213 lncRNA downstream 547422 4666012 ~ 4666455 (+) True G59340
XM_034303582.1 mRNA upstream 737 4090797 ~ 4117049 (+) True LOC117597051
XM_034303575.1 mRNA upstream 56272 3739301 ~ 4061514 (+) True LOC113545588
XM_034303806.1 mRNA upstream 74917 3988753 ~ 4042869 (+) True LOC117597091
XM_034303807.1 mRNA upstream 74917 4012307 ~ 4042869 (+) False LOC117597091
XM_034303810.1 mRNA upstream 137166 3973201 ~ 3980620 (+) True LOC113547235
XM_034303816.1 mRNA downstream 172028 4290618 ~ 4295137 (+) True LOC113547236
XM_034303799.1 mRNA downstream 197188 4315778 ~ 4334167 (+) True LOC113537671
XM_034303589.1 mRNA downstream 252967 4371557 ~ 4394005 (+) True LOC117597054
XM_034303590.1 mRNA downstream 276895 4395485 ~ 4408386 (+) True LOC117597055
XM_034303591.1 mRNA downstream 298959 4417549 ~ 4431006 (+) True LOC117597057
XR_004578033.1 other upstream 111445 4005153 ~ 4006341 (+) True LOC117597099
TU69947 other upstream 265219 3850423 ~ 3852567 (+) False LOC113545588
TU69928 other upstream 387438 3728456 ~ 3730348 (+) False LOC113547237
trnav-aac_17 other upstream 1315567 2802147 ~ 2802219 (+) True trnav-aac_17
trnav-aac_16 other upstream 1318358 2799356 ~ 2799428 (+) True trnav-aac_16
XR_003404798.2 other downstream 414331 4532921 ~ 4553038 (+) True shrprbck1r
XR_004578071.1 other downstream 531887 4650477 ~ 4653121 (+) True LOC117597167
TU70239 other downstream 588852 4707442 ~ 4708398 (+) True G59366
TU70376 other downstream 836545 4955135 ~ 4955462 (+) False LOC113547245
TU70397 other downstream 855605 4974195 ~ 5008133 (+) True G59492

Expression Profile