RNA id: TU70170


Basic Information

Item Value
RNA id TU70170
length 205
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G59304
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 4555395 ~ 4555599 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctgaatacAGCCACATctccaattataaaagggtgggcacacttatgcaaccaggttattgtaacttttttatttttcctgtttttccctaACATGTTTCTCTTTGGTTTCACTTAATTTTTCTACACTGTAATGTCACTCTGAGGTTTGAAAAAGTTCTAAcattatttatcttggtttcatcacaAAAGCCTGCCATTGTAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69979 lncRNA upstream 168589 4049152 ~ 4386806 (+) False LOC117597054
TU70012 lncRNA upstream 182838 4372121 ~ 4372557 (+) False LOC117597054
TU70002 lncRNA upstream 258930 4293289 ~ 4296465 (+) False LOC113547236
XR_004578031.1 lncRNA upstream 436805 4117786 ~ 4118590 (+) True LOC117597097
TU69985 lncRNA upstream 494554 4058274 ~ 4060841 (+) False LOC113545588
TU70208 lncRNA downstream 108012 4663611 ~ 4664466 (+) True G59338
TU70213 lncRNA downstream 110413 4666012 ~ 4666455 (+) True G59340
TU70215 lncRNA downstream 114264 4669863 ~ 4670083 (+) True G59342
TU70216 lncRNA downstream 115381 4670980 ~ 4671460 (+) True G59343
TU70198 lncRNA downstream 121568 4677167 ~ 4680239 (+) True G59329
XM_026947464.2 mRNA upstream 2357 4532921 ~ 4553038 (+) False shrprbck1r
XM_026947463.2 mRNA upstream 2357 4532922 ~ 4553038 (+) False shrprbck1r
XM_034303801.1 mRNA upstream 41932 4463938 ~ 4513463 (+) False LOC117597089
XM_034303802.1 mRNA upstream 41932 4463938 ~ 4513463 (+) False LOC117597089
XM_034303800.1 mRNA upstream 41932 4475196 ~ 4513463 (+) True LOC117597089
XM_026947552.2 mRNA downstream 183971 4739570 ~ 4746302 (+) True mnx1
XM_034303594.1 mRNA downstream 218587 4774186 ~ 4789253 (+) True LOC113547242
XM_034303595.1 mRNA downstream 250055 4805654 ~ 4866411 (+) True LOC113547214
XM_026947547.2 mRNA downstream 324201 4879800 ~ 4894423 (+) True si:ch211-188c16.1
XM_026947564.2 mRNA downstream 341369 4896968 ~ 4913622 (+) True LOC113547295
XR_003404798.2 other upstream 2357 4532921 ~ 4553038 (+) True shrprbck1r
XR_004578033.1 other upstream 549054 4005153 ~ 4006341 (+) True LOC117597099
TU69947 other upstream 702828 3850423 ~ 3852567 (+) False LOC113545588
TU69928 other upstream 825047 3728456 ~ 3730348 (+) False LOC113547237
trnav-aac_17 other upstream 1753176 2802147 ~ 2802219 (+) True trnav-aac_17
XR_004578071.1 other downstream 94878 4650477 ~ 4653121 (+) True LOC117597167
TU70239 other downstream 151843 4707442 ~ 4708398 (+) True G59366
TU70376 other downstream 399536 4955135 ~ 4955462 (+) False LOC113547245
TU70397 other downstream 418596 4974195 ~ 5008133 (+) True G59492
XR_004578077.1 other downstream 623963 5179562 ~ 5188046 (+) False LOC113547261

Expression Profile