LOC117597090 (LOC108268231,LOC108268232,LOC108261094)


Basic Information

Item Value
gene id LOC117597090
gene name LOC108268231,LOC108268232,LOC108261094
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 3100304 ~ 3103299 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303805.1
CATAAACAGAAAACGAGTTTCTTTCATCAGAACGGCAAATCTCAAGCTTCTCATTTTTAAGCAACTAAATCCACTTCATGGCTTCCTCCAGCAGTGTCCTGTGTGAAGATCAGCTCCAGTGCTCCATCTGTCTGGAGGTGTTCACTGATCCAGTCTCTACTCCATGTGGACACAACTTCTGTATGATCTGTCTCAGAGAGTTCTGGGACAGCAGTTCACACTGCCAGTGTCCAATGTGTAAGACGGAATTCCCTAAACGTCCTGATCTACGTGTGAATACGTTCATCTCTGCACTTGCTGCTCCATTTAAGAAGTCAGTTCAGGAGAAATCCAGCAGCGCTGCAGATCCGCTTCCCTCTAAGCCTAAGAAGGTTCTGTGTGACTCCTGCACTGAGGAGAAGATGGAGGCTCTAAAGTCCTGTCTGCACTGTGGAGTTTCTTTCTGTAACACTCATCTGATGCTCCATAAAACTACACCTAAACTCATGAAGCACAAACTGATGGAGCCtgtggagaacctggaggactACATCTGCCAGAAACATGAGAGACCCCTGGAGCTGTTCTGTAGAGACGAccagacgtgtgtgtgtcagttctgTACTGAGGGAGACCACAAAACTCACAGCACCGTTCCTATAGAGGAGGAAGCTGAAGAGAAGAAGACTGAGTTGGGAAAGACACGAGCAGAAGTTCAGCAGATGATCCAGGAGCGACTGAAGAAGATTGAGGAACTCAAACACTCTGTAGAACTCAATAAAaaaaacacagagaaggAGAAACTAGACGTTGTGGAGATCTTCAGTGCTCTGATGCGCTGCATTGAGAGAAGCCAGGCTGAGCTGCTTAAGGTGAtggaggagaagcagaaagCAGCAGAGAGGCAGGCTGAAGAGTTGATTAAAGAGCTGGAGCAGGAAATCACTGAGCTAAAGAGGAGAAacactgagctggagcagctctcacacactgacGATCACCTCCACCTCCTACAGATTTCCCCGTCACTCCGAATCCCTCCACATACCAAGAACTGGACTGATTTTAGTATAAACTCTCACCTGAGTGTGGAGACTCTGAGGAGAAATCTGTCTCAGCTTCAGGAGTCTCTGAGTAAGGAAATGGAGAAACTTGTTAAAACTGAACTGAAACGAATTTCACAATATGCAGCGAATGTGACTCTGGATCCTGATACAGCACATCCTAAACTCATCCTGTCTGATGATGAGAAACAAGTAAGACACAAAAGATCCACAAAACAGAACCTCCCTGACAATCCGGAGAGGTTTGATGCTTCTCTGTATGTGCTGGGAAACGAGGGATTCTCTTCAGGGAGATTTTACTATGAGGTGCAGGTTCAAGGAAAAACAGACTGGATTTTAGGAGTGGCCAGAGAGTCTGTTAACAGGAAGGGACTGATTAAACCTTGCCCTGAAAATGGATACTGGTGTGTGTGGAAACGAAATGATGATAAATATTCGGCCTGGGACTCTCCTCGTGTCTCCCTCTCCATGAAACAGGTTCCTCGGAAAGTGGGGGTGTTTGTGGATTATGAGGAAGGTCTGATCTCCTTCTATGATGTTGAGGCCACGTTTCATATCTATTCTTTCATTGGTCAGACTTTCACTGAGAAACTTTATCCAATATTCAGCCCCTGCAATGATAACAGAGGTCACAATGTAGAACCTCTGGTCATCTTGTAATGGAATTAAACAGTAATTCTTTAATTGATTTCATTTCTGCTATGAACACCTTATCATCCTCACCTTGAGTTGATTCCTGCCTTAACAATGTGCAATaatcttttttaatcatttaatgcatttatgtgTACTTGATTTGTATTGACAACCTTATAGTTTGTCCCTATGacaaactataaataaatgaataaataattactgTTATGAGCACTAATTACTTTAATCCAAAAATCAGTTCTGAAACTGGAACTTCAGACAGTCTCACCTGGGGCATGTTCAGGAAATCGTGTATTTACAGTAGCAATTATGTGTTAAGATTTTACTCTACAGTGTCTATACAGTCTGTCTATACACTCTCCTCTCACTGGATGTCAGTGTTTAGTTGATTAAAGGTAAT

Function

NR:

description
PREDICTED: E3 ubiquitin-protein ligase TRIM39-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303805.1 True 2100 mRNA 0.43 7 3100304 3103299

Neighbor

gene id symbol gene type direction distance location
LOC113523990 LOC108268232 coding upstream 2697 3086989 ~ 3097607 (+)
LOC113523977 LOC108268236,LOC108261094,LOC108268232,LOC108268231 coding upstream 7767 3088848 ~ 3092537 (+)
sorcs2 sorcs2,LOC107590992,LOC107656200,LOC106577493,LOC107556072 coding upstream 18815 2861800 ~ 3081489 (+)
tada2b tada2b,LOC107591039,LOC106599821,LOC107556062 coding upstream 281260 2811374 ~ 2819044 (+)
trnav-aac_17 NA coding upstream 298085 2802147 ~ 2802219 (+)
LOC113523992 LOC108261482,LOC108261096 coding downstream 14592 3117891 ~ 3128766 (+)
LOC113523989 LOC108261094,LOC108268231,LOC108268232,LOC108261393,LOC108268234 coding downstream 29641 3132940 ~ 3138859 (+)
LOC113524001 LOC108261393,LOC108268234,LOC108268232,LOC108261094,LOC108268231 coding downstream 35821 3139120 ~ 3149196 (+)
dnajb6b dnajb6 coding downstream 46319 3149618 ~ 3188467 (+)
LOC117597046 NA coding downstream 398510 3501809 ~ 3520648 (+)
G58503 NA non-coding upstream 37839 3061215 ~ 3062465 (+)
G58500 NA non-coding upstream 127191 2972572 ~ 2973113 (+)
G58473 NA non-coding upstream 298260 2787469 ~ 2802044 (+)
G58458 NA non-coding upstream 317964 2715633 ~ 2782340 (+)
G58465 NA non-coding upstream 372461 2682037 ~ 2727843 (+)
G58864 ptprn2 non-coding downstream 160404 3263703 ~ 3268331 (+)
G58999 NA non-coding downstream 433606 3536905 ~ 3538758 (+)
G59030 NA non-coding downstream 498264 3601563 ~ 3602067 (+)
G59085 NA non-coding downstream 552412 3655711 ~ 3655923 (+)
LOC117597098 NA non-coding downstream 554858 3658157 ~ 3659135 (+)
grpel1 grpel1,LOC107739410,LOC107653296,LOC107590998 other upstream 265795 2821311 ~ 2834509 (+)
trnav-cac_4 NA other upstream 384083 2716149 ~ 2716221 (+)
trnav-aac_11 NA other upstream 384754 2715478 ~ 2715550 (+)
trnav-aac_10 NA other upstream 394013 2706219 ~ 2706291 (+)
trnav-aac_9 NA other upstream 405216 2695016 ~ 2695088 (+)
wdr97 LOC108268253 other downstream 507793 3611092 ~ 3630110 (+)
LOC113525491 NA other downstream 536531 3639830 ~ 3648060 (+)
LOC113547237 LOC108261305,LOC108268217,LOC108261462,LOC108268211,LOC108261092 other downstream 625157 3728456 ~ 3736323 (+)
LOC113545588 LOC108261092,LOC108261462,LOC108261482,LOC108268206,LOC108268211,LOC108261305,LOC108268217 other downstream 636002 3739301 ~ 4061514 (+)
LOC117597054 LOC108261095,LOC108261462,LOC108261092 other downstream 945853 4049152 ~ 4394005 (+)

Expression


Co-expression Network