sorcs2 (sorcs2,LOC107590992,LOC107656200,LOC106577493,LOC107556072)


Basic Information

Item Value
gene id sorcs2
gene name sorcs2,LOC107590992,LOC107656200,LOC106577493,LOC107556072
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 2861800 ~ 3081489 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034303986.1
CATCACCgctcctcttctctccctctctctccctctctctctctctctctctctctctctcacggaAGAGCCACCGTCTAGTTGTTCCCCGTGAGTCGGTTCTCCGTGGTTTTTGagtcacgcacacacacgcatacacacacacgcagacacacacagacacgggcGCGCGTCATGGCGCACGTCGCGCACCTGTTCGTCGCGCTGGCGTGGATTATTTCGGTGCACGGATCTCTCTGCAGCGGCGGCGCTGGCGTTGGTGTCGGCGTGTTGAACCGGAGGCACGAGCATCACCGCCTCCTCGCTGAGGGtccggaggaggaggagaccGGAGCGGCACCGGATGCACCGCGGAGGCTCGCGAGGTCGCCGAAAGTGGCGTCTCTGCTGAGCAGCTCGTTCGTGCTGAAAGGCGACGCCGCGCACAACCAGGCGATGGTTCACTGGACGGGCGAGAACAGCAGCGTCATCCTCATCCTCACGAGATATTACCACGCTGATTCCAGCAAAGTGCTCGAGAGCTCCCTCTGGAGGTCCAGTGATTATGGAACTACTTACACCAAACTCAACCTGATGCCTGGAACCACCATCATAGTCACCAATTTCTACATTTGCCCCAGTAATAAGAGGAAGgtgatcCTGATCAGCTCCACCATTAATGAACAGGATCAGATGCTCTTCATCAGCACAGATGAGGGAGCGTCGTTCCAGAGACAGCCTTTGTCCTTCACCGTGGAGACGCTCCTGTTCCATCCGTCAGACGAGGACAAACTCCTGGCTTACAGCAAAGAGGCCACGGTTTATGTGTCCACTGATCTGGGGAGGAAATGGACACTGCTGCAGGAACGAGTGACCAAAGACCGAGTTTTCTGGTCCGTGGCCGGGGTGGATGTGGACCCTGATTTGGTTCATATGGAGATACAAGACACTAGTGGAGgttacCTGTATGTAACGTGTCTGATACAGAACTGCTCGGATAAGATGGTGACGGCTCAGTTTCTGGGTAAAATCGACCACAATTCGCTCTCGGTGCAGAACGACTACGTGTTTGTGAAGGTTACCATGGCTAATCGTACAAAGTGCTATGTCTCATATCGAAGGAACGAGTTTGTGCAGATGCGCTTGCCCAAGTTCGCCCTGCCGAAGGATGTGCAGGTTGTGAGCACGGATGAGAACCAGGTGCTGCTGGCCCTGCAGGAATGGTACCAGACCGACACGTATAACCTGTACGCGTCAGACCAGCAGGGTGTTTATTACTCCATCTTGTTGGAGAACGTGCGCAGCACCAAGCAGCCTGAGGAGAACGTCATCATCGACGTGCTGGAGGTGCGTGGCATCAAAGGCGTGTTCTTAGCCAATCAGAAAATAGACGGCAAAGTCAGGACTCTCATCACATATAATAAAGGTCGGGATTGGGAGCTGCTAGCTCCGCCCACCACTGACATGAACGGCAAACCGGTGAACTGCAAACAGCCAGACTGTCACCTTCACCTCCACCTGAGATGGGCTGATAACCCGTACGTTTCTGGGACGGTCCACACTAAAGACTCCGCCCCCGGCCTCATCATGGGTGCAGgCAATCTTGGCTCTCAGTTGGTTGAATATAAAGAGGAAATGTACATCACCAATGATTGTGGAAAGACCTGGAGACAGGTGTTTGAAGAGGAGCACCACATCCTGTATCTGGATCACGGCGGCGTCATCGTGGCCATCAAAGACACGTCCATCCCATTAAAGATCCTCAAGTTCAGTGTGGATGAAGGACGTACATGGAGCATCCACAATTTCACCAGCACCTCGGTGTTCGTGGACGGCTTGCTGAGTGAACCCGGAGATGAAACGCTGGTTATGACcgtatTTGGTCACATTAGCTATCGGTCAGACTGGGAGCTGGTGAAGGTGGATTTCCGTCAGTCTTTCCCCCAGCAGTGTAACGAGGACGACTACGACTCGTGGAAACTCACTAACCTACAGGGAGAGAGTTGCATCATGGGACAGGAGCGAATGTACAGAAGAAGGAAGGAGTCGTCTCTGTGCATTAAAGGGAAGAGCTACACGTCGGCGCTAACGGCTAAACCCTGTCAGTGCACGGAGAAAGACTTCAGCTGtgacTATGGATTTGAGCGCAGCCCGAAAGCAGAGGGTGATCGCTGTTACCATGACTTCTGGCACGATCCTGAATCTCCGCCCGAAAACTGCCATTTGGGACACACCTACCAGACCAGCACaggctACCGTAAGCTCATCTCGAATGTGTGTGAAGGCGGAGTGAATAAAGAGGAGAGCGGGAAGCAGCACGCCTGCCCTCTGATGCCCCCTAGAGGCCTACAACTGGGCATCAAGGGGCAGATGCTCACTGTGGCGCCTGGTGATGACATCACCTTCATCGTCCATCAGGAGCGGggtgaCACGAGCAGTACCCGGTACCAGGTGGACCTCTCTGACGGAGTGCGGGCGATTTATCAGAACCTAACGGTGACAGATGAACCGATCCAGCATCGTTATGAGAAGACGGGTTTTTATCGGGTCAGCGTGAAGGCGGAGAACGCAGCCGGTCACGATCAGGCCACGATGTACATCCGGGTCACACTGCCTCTGCAGGAAGTCCATCTGGAAGTGGTGCCCATCGCaggaaggaaacaggaagtgaatctGACTGCTGTGGTGCTTCCTGAGGACTCGAACCTCACCGTCTTCTACTGGTGGATCGGAGAGGAGCTGCAGCCGAGGCTGACGCTGGAGAACAGCATTCTCACGAGTTTTTCTGAAGAAGGTGAGATCTCCGTCACGGTTCAGGCGTCTAACGGCCGCTCCGCGGTGCAGGACAGCAAAACCGTACGCGTTTACGATCATTTCCAGGTCATTCCGCTTAGCTTCAGTCCGAACCTGGATCGCTTCAACCCGAACATCCCGGAGTGGAGAGAGGACGTGGGACATGTGGTCACCAAGATGCTGGCCAAGATCACAGGACTTCCTCAGGAGTCGATGGTTACCATGGTGAAGCCCGGGCTGCCAACCAGAGCAGACTTATATGTGTTGCCCACAGAGGACACGCCCACCACGAGGAGCGGGTTTGCAGACAAGCGCGTGTCCACCATAAAGCAGGCTCTGAGAGAGAGTAACGTCAGCTTCATCGTGCGTGGTGGACTGAGAGTGCTGGTGACTCTGACAGATCCTGACGCAGACTCTCGGATTGGTGCTGCAAGTCCCGGATTCTGGGCTTTGGCTGGCATTCTTCTCGTCACCTTCATCACTACAGGACTCTTCTTCCTCTACAagtttaaaagAAAGCTGCCAGGACGTAACGTCTACGCCCAGATGCACAACGAAAAGGAGCAGGAAATGACCAGCcccgtcaatcacagcgacGACACGCAGCACATCATCCAGGGGGAGGAGTTTATCGACGATGACCTCGACTCGCAGACGCTGGGTAACGGCCGAGgcaATCACTCGGGAGTTGTGCTGAGCATCACATCGAGGGAACTGCACGGATACCTGAGCAGCTGATGCTCTTTAGCTCCGCCCACCAGAACGGAGAATGCCTTTAACTCCGCACACCTGAAAGGACAAAGccgtttaggccacgcccacctgTGACCCTAACACGCCCAGACAGGAGGAAAAGTGAAACTGCACATGTTAACCATCAGCACAGCAACATCTCTCTcaccatctgtctgtctctctcactgtctctctctcacgcacacacacacacacacacacactgtctctc
>XM_034303987.1
TTCAGTCTCTGCTCCTTTTTATAGTTTTCGCTGAATGAGAGTGTTTGCTAAGCGCAAATGTACTGACTACATTGGAGTAGTCAGGATTTGGAGCTCTTAAAAGgtgatcCTGATCAGCTCCACCATTAATGAACAGGATCAGATGCTCTTCATCAGCACAGATGAGGGAGCGTCGTTCCAGAGACAGCCTTTGTCCTTCACCGTGGAGACGCTCCTGTTCCATCCGTCAGACGAGGACAAACTCCTGGCTTACAGCAAAGAGGCCACGGTTTATGTGTCCACTGATCTGGGGAGGAAATGGACACTGCTGCAGGAACGAGTGACCAAAGACCGAGTTTTCTGGTCCGTGGCCGGGGTGGATGTGGACCCTGATTTGGTTCATATGGAGATACAAGACACTAGTGGAGgttacCTGTATGTAACGTGTCTGATACAGAACTGCTCGGATAAGATGGTGACGGCTCAGTTTCTGGGTAAAATCGACCACAATTCGCTCTCGGTGCAGAACGACTACGTGTTTGTGAAGGTTACCATGGCTAATCGTACAAAGTGCTATGTCTCATATCGAAGGAACGAGTTTGTGCAGATGCGCTTGCCCAAGTTCGCCCTGCCGAAGGATGTGCAGGTTGTGAGCACGGATGAGAACCAGGTGCTGCTGGCCCTGCAGGAATGGTACCAGACCGACACGTATAACCTGTACGCGTCAGACCAGCAGGGTGTTTATTACTCCATCTTGTTGGAGAACGTGCGCAGCACCAAGCAGCCTGAGGAGAACGTCATCATCGACGTGCTGGAGGTGCGTGGCATCAAAGGCGTGTTCTTAGCCAATCAGAAAATAGACGGCAAAGTCAGGACTCTCATCACATATAATAAAGGTCGGGATTGGGAGCTGCTAGCTCCGCCCACCACTGACATGAACGGCAAACCGGTGAACTGCAAACAGCCAGACTGTCACCTTCACCTCCACCTGAGATGGGCTGATAACCCGTACGTTTCTGGGACGGTCCACACTAAAGACTCCGCCCCCGGCCTCATCATGGGTGCAGgCAATCTTGGCTCTCAGTTGGTTGAATATAAAGAGGAAATGTACATCACCAATGATTGTGGAAAGACCTGGAGACAGGTGTTTGAAGAGGAGCACCACATCCTGTATCTGGATCACGGCGGCGTCATCGTGGCCATCAAAGACACGTCCATCCCATTAAAGATCCTCAAGTTCAGTGTGGATGAAGGACGTACATGGAGCATCCACAATTTCACCAGCACCTCGGTGTTCGTGGACGGCTTGCTGAGTGAACCCGGAGATGAAACGCTGGTTATGACcgtatTTGGTCACATTAGCTATCGGTCAGACTGGGAGCTGGTGAAGGTGGATTTCCGTCAGTCTTTCCCCCAGCAGTGTAACGAGGACGACTACGACTCGTGGAAACTCACTAACCTACAGGGAGAGAGTTGCATCATGGGACAGGAGCGAATGTACAGAAGAAGGAAGGAGTCGTCTCTGTGCATTAAAGGGAAGAGCTACACGTCGGCGCTAACGGCTAAACCCTGTCAGTGCACGGAGAAAGACTTCAGCTGtgacTATGGATTTGAGCGCAGCCCGAAAGCAGAGGGTGATCGCTGTTACCATGACTTCTGGCACGATCCTGAATCTCCGCCCGAAAACTGCCATTTGGGACACACCTACCAGACCAGCACaggctACCGTAAGCTCATCTCGAATGTGTGTGAAGGCGGAGTGAATAAAGAGGAGAGCGGGAAGCAGCACGCCTGCCCTCTGATGCCCCCTAGAGGCCTACAACTGGGCATCAAGGGGCAGATGCTCACTGTGGCGCCTGGTGATGACATCACCTTCATCGTCCATCAGGAGCGGggtgaCACGAGCAGTACCCGGTACCAGGTGGACCTCTCTGACGGAGTGCGGGCGATTTATCAGAACCTAACGGTGACAGATGAACCGATCCAGCATCGTTATGAGAAGACGGGTTTTTATCGGGTCAGCGTGAAGGCGGAGAACGCAGCCGGTCACGATCAGGCCACGATGTACATCCGGGTCACACTGCCTCTGCAGGAAGTCCATCTGGAAGTGGTGCCCATCGCaggaaggaaacaggaagtgaatctGACTGCTGTGGTGCTTCCTGAGGACTCGAACCTCACCGTCTTCTACTGGTGGATCGGAGAGGAGCTGCAGCCGAGGCTGACGCTGGAGAACAGCATTCTCACGAGTTTTTCTGAAGAAGGTGAGATCTCCGTCACGGTTCAGGCGTCTAACGGCCGCTCCGCGGTGCAGGACAGCAAAACCGTACGCGTTTACGATCATTTCCAGGTCATTCCGCTTAGCTTCAGTCCGAACCTGGATCGCTTCAACCCGAACATCCCGGAGTGGAGAGAGGACGTGGGACATGTGGTCACCAAGATGCTGGCCAAGATCACAGGACTTCCTCAGGAGTCGATGGTTACCATGGTGAAGCCCGGGCTGCCAACCAGAGCAGACTTATATGTGTTGCCCACAGAGGACACGCCCACCACGAGGAGCGGGTTTGCAGACAAGCGCGTGTCCACCATAAAGCAGGCTCTGAGAGAGAGTAACGTCAGCTTCATCGTGCGTGGTGGACTGAGAGTGCTGGTGACTCTGACAGATCCTGACGCAGACTCTCGGATTGGTGCTGCAAGTCCCGGATTCTGGGCTTTGGCTGGCATTCTTCTCGTCACCTTCATCACTACAGGACTCTTCTTCCTCTACAagtttaaaagAAAGCTGCCAGGACGTAACGTCTACGCCCAGATGCACAACGAAAAGGAGCAGGAAATGACCAGCcccgtcaatcacagcgacGACACGCAGCACATCATCCAGGGGGAGGAGTTTATCGACGATGACCTCGACTCGCAGACGCTGGGTAACGGCCGAGgcaATCACTCGGGAGTTGTGCTGAGCATCACATCGAGGGAACTGCACGGATACCTGAGCAGCTGATGCTCTTTAGCTCCGCCCACCAGAACGGAGAATGCCTTTAACTCCGCACACCTGAAAGGACAAAGccgtttaggccacgcccacctgTGACCCTAACACGCCCAGACAGGAGGAAAAGTGAAACTGCACATGTTAACCATCAGCACAGCAACATCTCTCTcaccatctgtctgtctctctcactgtctctctctcacgcacacacacacacacacacacactgtctctc

Function

symbol description
sorcs2 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SORCS2 (sortilin related VPS10 domain containing receptor 2).

NR:

description
PREDICTED: VPS10 domain-containing receptor SorCS2-like isoform X6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034303986.1 True 3739 mRNA 0.55 27 2861800 3081489
XM_034303987.1 False 3209 mRNA 0.53 25 3031413 3081489

Neighbor

gene id symbol gene type direction distance location
tada2b tada2b,LOC107591039,LOC106599821,LOC107556062 coding upstream 42756 2811374 ~ 2819044 (+)
trnav-aac_17 NA coding upstream 59581 2802147 ~ 2802219 (+)
trnav-aac_16 NA coding upstream 62372 2799356 ~ 2799428 (+)
trnav-aac_15 NA coding upstream 70407 2791321 ~ 2791393 (+)
trnav-aac_14 NA coding upstream 73002 2788726 ~ 2788798 (+)
LOC113523990 LOC108268232 coding downstream 5500 3086989 ~ 3097607 (+)
LOC113523977 LOC108268236,LOC108261094,LOC108268232,LOC108268231 coding downstream 7359 3088848 ~ 3092537 (+)
LOC117597090 LOC108268231,LOC108268232,LOC108261094 coding downstream 18815 3100304 ~ 3103299 (+)
LOC113523992 LOC108261482,LOC108261096 coding downstream 36402 3117891 ~ 3128766 (+)
LOC113523989 LOC108261094,LOC108268231,LOC108268232,LOC108261393,LOC108268234 coding downstream 51451 3132940 ~ 3138859 (+)
G58473 NA non-coding upstream 59756 2787469 ~ 2802044 (+)
G58458 NA non-coding upstream 79460 2715633 ~ 2782340 (+)
G58465 NA non-coding upstream 133957 2682037 ~ 2727843 (+)
LOC117597104 NA non-coding upstream 241721 2611253 ~ 2620079 (+)
G58433 NA non-coding upstream 273307 2505730 ~ 2588493 (+)
G58864 ptprn2 non-coding downstream 182214 3263703 ~ 3268331 (+)
G58999 NA non-coding downstream 455416 3536905 ~ 3538758 (+)
G59030 NA non-coding downstream 520074 3601563 ~ 3602067 (+)
G59085 NA non-coding downstream 574222 3655711 ~ 3655923 (+)
LOC117597098 NA non-coding downstream 576668 3658157 ~ 3659135 (+)
grpel1 grpel1,LOC107739410,LOC107653296,LOC107590998 other upstream 27291 2821311 ~ 2834509 (+)
trnav-cac_4 NA other upstream 145579 2716149 ~ 2716221 (+)
trnav-aac_11 NA other upstream 146250 2715478 ~ 2715550 (+)
trnav-aac_10 NA other upstream 155509 2706219 ~ 2706291 (+)
trnav-aac_9 NA other upstream 166712 2695016 ~ 2695088 (+)
wdr97 LOC108268253 other downstream 529603 3611092 ~ 3630110 (+)
LOC113525491 NA other downstream 558341 3639830 ~ 3648060 (+)
LOC113547237 LOC108261305,LOC108268217,LOC108261462,LOC108268211,LOC108261092 other downstream 646967 3728456 ~ 3736323 (+)
LOC113545588 LOC108261092,LOC108261462,LOC108261482,LOC108268206,LOC108268211,LOC108261305,LOC108268217 other downstream 657812 3739301 ~ 4061514 (+)
LOC117597054 LOC108261095,LOC108261462,LOC108261092 other downstream 967663 4049152 ~ 4394005 (+)

Expression


Co-expression Network