G205242


Basic Information

Item Value
gene id G205242
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 4355539 ~ 4356186 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU243084
GCTAAAATGCATCTCAGACTGCTTCAAGTGGTTTGAACAATCAGATATAAatgctttaaacacaagcagATGTAAACTGGGTCTTGATCATTGAGTAGAATACTGATCACCAAACTGTTCCTGGAGAGCTACAATTCCAACCCAATCCAATCGGATCCAATCGGATCATAATCTGATTATTAATCTGATTATATGAGACAGGTGTTGGATTAGGATTTGTTGGACCTGAACTCTGTAGTAAAGTAGATCCCCAGAAATACTCTGTTGTAGAATTCAACACAAAATCTTTACAGTGTAAAAGGTTCTTCagaggttctttaagggttcatcaAGGGTTGAGTTCAAGGTAGAGTTCAACAGAACCATTAATGGTTCTGAGGGACAATGAGAAGAACCCTTATAGGCACTAGATTTGGACTTTTCTTATGTGTGTACACTAAacaaggttcttcaagggttctgaGGATAGTTCTCAGCTTCCTAAAGGAGAAacaaggttcttcaagggttctgtAGATAGTTCTCAGCTTCCTAAAGGAGAAacaaggttcttcaagggttctgtGGATAGTTCTCAGCTTCCTAAAGGAGTTACCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU243084 True 598 lncRNA 0.39 2 4355539 4356186

Neighbor

gene id symbol gene type direction distance location
moto meioc coding upstream 129494 4215915 ~ 4226045 (+)
ccdc47 ccdc47,LOC107674171,LOC107729550,LOC107721963,LOC107658463 coding upstream 224064 4120854 ~ 4131475 (+)
kcnh6a kcnh6a,kcnh6,LOC108279946,LOC108427397 coding upstream 250785 4057751 ~ 4104754 (+)
gfap gfap,LOC107729544 coding upstream 311164 4034566 ~ 4044375 (+)
LOC117598989 LOC108191637 coding upstream 325089 4029809 ~ 4030450 (+)
ezh1 ezh1 coding downstream 171407 4527593 ~ 4549478 (+)
fmnl1a LOC108278868,LOC107654518,LOC107601298,LOC107721528,LOC108427416,LOC107720013 coding downstream 380855 4737041 ~ 4770496 (+)
LOC113528572 NA coding downstream 614636 4970822 ~ 4974830 (+)
wnt9b wnt9b,LOC108259511,LOC107721476,LOC108427420,LOC107601233 coding downstream 625840 4982026 ~ 4991251 (+)
map3k14a LOC108259239 coding downstream 701736 5057922 ~ 5078370 (+)
G204965 NA non-coding upstream 163440 4191737 ~ 4192099 (+)
G204912 NA non-coding upstream 247811 4105943 ~ 4107728 (+)
G204832 NA non-coding upstream 472580 3853496 ~ 3882959 (+)
G204860 NA non-coding upstream 485796 3864913 ~ 3869743 (+)
LOC113528035 NA non-coding upstream 487442 3856054 ~ 3868097 (+)
G205245 NA non-coding downstream 132 4356318 ~ 4356536 (+)
G205250 NA non-coding downstream 3219 4359405 ~ 4360374 (+)
G205263 NA non-coding downstream 37739 4393925 ~ 4394258 (+)
G205303 NA non-coding downstream 181312 4537498 ~ 4538155 (+)
G205299 NA non-coding downstream 193375 4549561 ~ 4551865 (+)
limd2 limd2,LOC107674139,LOC107658411 other upstream 369255 3966733 ~ 3986284 (+)
trnae-cuc_26 NA other upstream 384289 3971179 ~ 3971250 (+)
glyr1 glyr1,LOC107688117,LOC107590383,LOC107721499 other upstream 694375 3534289 ~ 3661164 (+)
LOC113527909 NA other upstream 1155406 3192704 ~ 3200133 (+)
pyya LOC108276154,LOC108434917 other upstream 1342680 3003608 ~ 3012859 (+)
plekhh3 plekhh3,LOC107601293,LOC107720008,LOC107688129 other downstream 264032 4620218 ~ 4670646 (+)
retreg3 fam134c other downstream 336291 4692477 ~ 4711316 (+)
psmc3ip psmc3ip other downstream 356687 4712873 ~ 4721468 (+)
gosr2 gosr2,LOC107654523,LOC102776032,LOC106601130 other downstream 647362 5003548 ~ 5014516 (+)
G206166 NA other downstream 1301426 5657612 ~ 5660848 (+)

Expression


Co-expression Network