G204832


Basic Information

Item Value
gene id G204832
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 3853496 ~ 3882959 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU242596
atacacacacacacacacacacacacacacacacacacacacacaaaaaaacacacacaaacacaaataaaaaaattaaatttgataCTCTGTTCAGTCTCTCCCTATAGATGGATGGCATAAAGAGTATATTTGAGGTCTACTGTTTCAGGAATGTTCCACTAACATACATGTATCTAAAGCGAGTCTTCGCTCATCTCCTCAGCACTGCTAGTCTTCTGTCTTCCCATTGGAGGATTGAGGAATGGGAGTGGTCAACAGGTTAACCGGTGGTTGGGATTGGTTAACCCCGAGACTCTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU242596 True 302 lncRNA 0.41 3 3853496 3882959

Neighbor

gene id symbol gene type direction distance location
LOC113527907 LOC108259599 coding upstream 97312 3747501 ~ 3756184 (+)
LOC113528497 NA coding upstream 111041 3737460 ~ 3742455 (+)
slc16a6b LOC108259325 coding upstream 119611 3723763 ~ 3733885 (+)
wipi1 wipi1,LOC107719990,LOC105899989,LOC107654490,LOC107590389,LOC107688112 coding upstream 139414 3694729 ~ 3714082 (+)
zgc:86896 LOC108259475,LOC108436955,LOC107590453,LOC105899990,LOC107719989,LOC107601274,LOC107654493 coding upstream 161129 3685478 ~ 3692367 (+)
rnf113a rnf113a,LOC107693494 coding downstream 27246 3910205 ~ 3916855 (+)
ddx42 ddx42,LOC102777021 coding downstream 52437 3935396 ~ 3947545 (+)
LOC113528362 NA coding downstream 65957 3948916 ~ 3950931 (+)
LOC113528358 NA coding downstream 76098 3959057 ~ 3960638 (+)
map3k3 map3k3,LOC107570753,LOC107674169,LOC107658467 coding downstream 107799 3990758 ~ 4019393 (+)
G204815 NA non-coding upstream 66918 3776604 ~ 3786578 (+)
G204773 NA non-coding upstream 137916 3672984 ~ 3715580 (+)
G204774 NA non-coding upstream 203958 3648189 ~ 3649538 (+)
G204790 NA non-coding upstream 206821 3645763 ~ 3646675 (+)
G204771 NA non-coding upstream 263465 3587902 ~ 3590031 (+)
G204912 NA non-coding downstream 222984 4105943 ~ 4107728 (+)
G204965 NA non-coding downstream 308778 4191737 ~ 4192099 (+)
G205242 NA non-coding downstream 472580 4355539 ~ 4356186 (+)
G205245 NA non-coding downstream 473359 4356318 ~ 4356536 (+)
G205250 NA non-coding downstream 476446 4359405 ~ 4360374 (+)
glyr1 glyr1,LOC107688117,LOC107590383,LOC107721499 other upstream 192332 3534289 ~ 3661164 (+)
LOC113527909 NA other upstream 653363 3192704 ~ 3200133 (+)
pyya LOC108276154,LOC108434917 other upstream 840637 3003608 ~ 3012859 (+)
LOC113528221 LOC108276032,LOC108276106 other upstream 945453 2867768 ~ 2908043 (+)
rundc1 rundc1 other upstream 1667332 2177683 ~ 2186164 (+)
limd2 limd2,LOC107674139,LOC107658411 other downstream 83774 3966733 ~ 3986284 (+)
trnae-cuc_26 NA other downstream 88220 3971179 ~ 3971250 (+)
plekhh3 plekhh3,LOC107601293,LOC107720008,LOC107688129 other downstream 737259 4620218 ~ 4670646 (+)
retreg3 fam134c other downstream 809518 4692477 ~ 4711316 (+)
psmc3ip psmc3ip other downstream 829914 4712873 ~ 4721468 (+)

Expression


Co-expression Network