LOC113528497


Basic Information

Item Value
gene id LOC113528497
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 3737460 ~ 3742455 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917083.2
TGCTCAGTTCATTTATTCTAGTCTGTTTGTATGGATTAGAGAATCCGGCTCTTACTCGGGAGAAGTAATCTTTGTGAACGTGTTTTAGTCTGTTTTTACACTTGATCAGAGAAAGGTCAAAAAGCAAGGTAACTTTTACTATGTCTAATGAAGGAACATCAGATGGCCAAATTGGAGAAGCTCTCTTAATCAGGGTGGTTCAGGATCAGATGAACACTATTGAAATAGCAAAGTTCTCTCTCCCATGCCTCCCAGAGGTTCAGCCTTTAACCAGTGTGCAGGAGCAGAAGCTTTTGGATCAGCTGTTTCAGGCAGTAAAAATGATCAGTGATCAGCTTAGTCACAATCATATCATTAATCGCCAGATCGATGGTTTAGCACGTCTGGGTGATAGGAAGATTTTTTCAAAGCTTGTGGAGGGTGTCTTCAGTGATGGACAGATCAACTGGGGAAGAATCATTGTGCTGTACTACGCAGTAGGAAAGCTGGCTGTAAAGATGGTACTGGCTAACTTGTCAAGAGTGTTCTCACAAATACTGGATTCATGTTTGGATTTCTTCAGGACAAAGCTTTTGGTATGGATTTGCAACATGGGCGGATGGATCAGCAGCATTTCAGCACTGATTCAATTCTCCAGTGAGCATATCTCTGCTTCCTCCCTCTGCACCATCCCGCTGCCTGCTGCACTCGTCAAGGCCTTCATCTGTGGGATTCTGTTGGGTGGCGCCATTGTCTGGAAACTCAACAGAAgcagctgagagagaaagagagagagagagaaatgagagaaaagaagaaggctGGAAGAAAATATACAAGATGCACTGTCACAAATGAATGCTTTTAACAGGTTTACCAGGTTTATAAAATGTGATACTTCCAGATCTTTCTATACTTTAGTAtgttatatagtgtataaatacCAATG

Function

GO:

id name namespace
GO:0043280 positive regulation of cysteine-type endopeptidase activity involved in apoptotic process biological_process
GO:0043065 positive regulation of apoptotic process biological_process
GO:0007005 mitochondrion organization biological_process
GO:0097190 apoptotic signaling pathway biological_process
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917083.2 True 928 mRNA 0.42 6 3737460 3742455

Neighbor

gene id symbol gene type direction distance location
slc16a6b LOC108259325 coding upstream 3575 3723763 ~ 3733885 (+)
wipi1 wipi1,LOC107719990,LOC105899989,LOC107654490,LOC107590389,LOC107688112 coding upstream 23378 3694729 ~ 3714082 (+)
zgc:86896 LOC108259475,LOC108436955,LOC107590453,LOC105899990,LOC107719989,LOC107601274,LOC107654493 coding upstream 45093 3685478 ~ 3692367 (+)
dus1l dus1l,LOC107590391,LOC107654489,LOC107688109,LOC107601270 coding upstream 97589 3630439 ~ 3639871 (+)
ppl ppl,LOC107720077 coding upstream 176782 3541110 ~ 3560678 (+)
LOC113527907 LOC108259599 coding downstream 5046 3747501 ~ 3756184 (+)
rnf113a rnf113a,LOC107693494 coding downstream 167750 3910205 ~ 3916855 (+)
ddx42 ddx42,LOC102777021 coding downstream 192941 3935396 ~ 3947545 (+)
LOC113528362 NA coding downstream 206461 3948916 ~ 3950931 (+)
LOC113528358 NA coding downstream 216602 3959057 ~ 3960638 (+)
G204773 NA non-coding upstream 21880 3672984 ~ 3715580 (+)
G204774 NA non-coding upstream 87922 3648189 ~ 3649538 (+)
G204790 NA non-coding upstream 90785 3645763 ~ 3646675 (+)
G204771 NA non-coding upstream 147429 3587902 ~ 3590031 (+)
G204679 NA non-coding upstream 334113 3399769 ~ 3403347 (+)
G204815 NA non-coding downstream 34149 3776604 ~ 3786578 (+)
G204832 NA non-coding downstream 111041 3853496 ~ 3882959 (+)
LOC113528035 NA non-coding downstream 113599 3856054 ~ 3868097 (+)
G204860 NA non-coding downstream 122458 3864913 ~ 3869743 (+)
G204912 NA non-coding downstream 363488 4105943 ~ 4107728 (+)
glyr1 glyr1,LOC107688117,LOC107590383,LOC107721499 other upstream 76296 3534289 ~ 3661164 (+)
LOC113527909 NA other upstream 537327 3192704 ~ 3200133 (+)
pyya LOC108276154,LOC108434917 other upstream 724601 3003608 ~ 3012859 (+)
LOC113528221 LOC108276032,LOC108276106 other upstream 829417 2867768 ~ 2908043 (+)
rundc1 rundc1 other upstream 1551296 2177683 ~ 2186164 (+)
limd2 limd2,LOC107674139,LOC107658411 other downstream 224278 3966733 ~ 3986284 (+)
trnae-cuc_26 NA other downstream 228724 3971179 ~ 3971250 (+)
plekhh3 plekhh3,LOC107601293,LOC107720008,LOC107688129 other downstream 877763 4620218 ~ 4670646 (+)
retreg3 fam134c other downstream 950022 4692477 ~ 4711316 (+)
psmc3ip psmc3ip other downstream 970418 4712873 ~ 4721468 (+)

Expression


Co-expression Network