slc16a6b (LOC108259325)


Basic Information

Item Value
gene id slc16a6b
gene name LOC108259325
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 3723763 ~ 3733885 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916693.2
GTGCCCGCGTCTCCCATACCGGCTCGAGCCGGTATAAAAATCTGccaggagaaagacagagaaagagaaagaaagagagagggagagagagagagagagggggtaaAAAGGGGGGAAAGACGAGGACAGACCGGTTATATAGGTGATGCTCGCGCTGGAAACGGAGTTACAGATGAATTAGAGCACGCGAGCGGTAATAGTGTGAGTTGGAGCCTCTGTAACAGCGGTACTTTTACCCACAGAGGAATAAACCGCTCTACATTCACAGTGTTACTGCTGAGTTCTGGGGAAAAGTAGCTCGGGAACGTGAAGATGCTGGTCAGGTTGCTGAAAGGAAGGTAGCCCGGGATTGTACTGTTGCTATTTTTGTAAGTGGACCACCGaatattttccacatttttgcCCAGTCAGGATTTTTTTGAAATGTATCAGTGATGTATTCATCAGTCCCTCATTTGCACACGAGGAGGAAATGTGTGCAACTCTTCAGCCTTGGACGTGACGAGTCGACCATGATGGGACCGATGCCCACTCTGCGCGGCTGCATGAAACCCAACGTCTACTCGCAGGTTCCTGATGGAGGCTGGGGCTGGGTCGTGGCCGTGGCTTTCTTCCTCGTGGAGGTTTTCACTTACGGCATCATCAAGATCTTCGGCATCTTCTTGCAGGACCTCACCAACCATTTCGGAGAGACAAACAGCCGGGTGTCCTGGATCGTCTCCATCTGTGTCTTCATCATGTCCTTCACAGctCCTCTCTCCTCAGTGCTGAGTAACCGGTTTGGATTTCGGCCGGTTGTGATGGTCGGGGGTGTCCTGATCAGTTTGGGTACCGTCACCACCGCCTTCACTACGTCCATCACTCAGATGTACATCACCACAGGACTCGTTGCAGGCCTCGGTTACTGCCTCACTTTCCTGCCCACTGTCACCATCCTCTCGCAGTACTTCAACAAGCGCAGGTCACTCGTCACGTCCATCGCCTCCACCGGAGAGTGCTTCTCACTTTTCGCCTTGGCTCCAGCCTTCAGCGCCTTGAAAGACCAGGTTGGCTGGCGTAACTGCATGATTGTCATAGGGCTCCTACAGGcttctgtgattggctgtggaGCCCTGCTCAGACCAATCATCATACAGCCTGAATGTTCTAAGCAGGAAGAGGAACTGGCAGGTCCTCAGTCTCCCCTTAAAACGAATCCTGAAAACAAATACGAGCTGGAGAACGAGTTCACGCGCACGTCGTTGAACTCCGTCGACTCCGGCGTTCAGTCCATCTCCTCGGGAGAGCAGAACGTGGCCTTGTCCAACATCTCAGAAACAGATCTGGAGGAGGTGGAGAAAGGAGAGAGTGAAGATGATCAGGCACTGCCTTCCATTCctctaaaacaaaaacagaacgaggagagaaaaaggaaacGCCTCGATTTATCGCTGCTAAAAGACATCAGCTTCATTTTCTACTCTCTCTTTGGCCTCTTTGCCTCGCTGGGTTTTTTTGCACCACAGCTCTACCTGATTGAGCTGAGTGTGTCATACGGGGTGCAGCGCAACAAGGCCACTTACATGCTCTCCATCATGGCTGCGGCTGAGATTTTTGGCCGCCTGTCCATCGGCTGGATAATGAACCGCAGGCCCATCCGCAAAATCTACATCCTGCTGATCTGCACGGTGCTGCTGTGCCTGGTGCTCGCACTCTTCCCTGCCTTCTCCTCACATTTCTGGGCACTCGCTTCCTGCTGCGCCATCTGCGGCTTCCTGTTTGGCACGGTCGCCTCCACCCACATCCCCATGCTGGCCGAGGACGATGTGTTGGGCATGGAGAGGATGACGATGGGTGCCGGAGTTTACGTTTTCATCCAGAGCTTTGCTGGCCTCGCCGGTCCACCACTCGCAGGCGTGTTGGTGGACAAGATGAAGGATTACGGCTTGGCGTTTTACTCCAGCGCGGCCGGGGTGTGTGTCGGcgcttttttcctctcactggTGCGACCGGCTAAAACCGGTTGGAGCTGCTGCAGGAGGGACAGGAAGCGTGtagaacaggaacaggaagttaCGCCGGATGACTTCCTGGAAGTGGACATAATTCTGGAGAGCAGTGAGGCGAAAAAGAACATGGCACAAGTCTGAGATACAAACATACACGCACatgaacacgcacacacaagacTTGAACAATACACCCAAAGATGGACGTTATGGATGTTGATTCCTTTTTTTGTGCCTCATTTTCTCTccaattgtatttttttttatgttagtttttttttttgagaccaAATGAAACCTCAAGCTGGTGATGCTGCTGTTCTCATTAACATAGtcttgattttattattttgtgtagagGTTGTGTCGATCTCAGTAAGGATGAACGATATGTTACAGAGGATACGTTACATCACCAGTTAGCATTGTTTTCGACAATACCAGGTCGCCAACTGTTTTATCCTTTTCCTTGTTAAGTAATTTATTTGTCAAAACATGTGGCAGTATTTAAAAAGATGAATTCCAGTGCAGAACAATGActgtaagctttttttttcctaagctCTAAAAAGCTAGCTGTTGCGATACATCCTCATATCGCCTGGCCCTGTCTCAGCactgtattattttatgtaGTTTACACCACAGTTTGTTTCTGGATCCATAACGGCGCTTATTAGAGAGCAATTTCGCCAAAATTTCTCAATGTCAACATAATTTGCTTGATGAGAAatacaaaatcatgcagagtgttttaataaaaaaatggttGAGTTTGAATCGGTCACAATGGCAGAGAGAGGAATCAGTGATCCAATGCACTTAAAGCGTGACACTATACAAAGCGGGTGTGGTCATTAATATGGGGCGGAGTTaagttcaaatagctgtttctcagaaacagtaagtggattttttttttgatgatgacctgatcatttaaaaacagctgccatcagccaatcaactttcagcaggcatttgacaagGTTTCCATTTTTTCACTGAAGAAGGTTTGTTACAGTGAAAGTTCTCCTCATTCGTTGTTTTAAACCATAAGAATTTGCCTTTTGGATcatttagccccgcccactctcATTCCTAGGATTTTGCTGTATCTTCCAAGGATTCAGTAGACCCTGAcactcaataattatcaaaaacattatGAGATTTGAAAACAATTTGGTCACCACATGCCAATCTCATGAGAGGGTGGAGCTTAATTTACTCAAATAGCCGAAACTTATGATTGAGTgcatggattcacaaaaaaattgaaGGACAAGATTCTGATTCTCGGGTTATTCATGAGGGGGCGGGTTTTgttcaaatagctgtttctcagaCACGGTAAGTctgatcaagctgaaatttaGTGTACTATGTTTTTATACTAATCTATAATTGGATTTCTGATGaggttacttaaaaaaaaacaatcagctcTCAGCAGGCTTCTGAGAGAGTTAGAACTGAGGTATTGTAACAAAATTTGAACAAAactaatttattataaaattgtatatacagtaaagaaATCAGAGTTTGTCTATTTTTCTAGAATGTACCTTTTTGATAAACACTCTGCATGACTTTGTTCACTTCTCAACTGAAGAATAATGCTGACATTTTGAATTTAAGCatctctgtttatgtttttattactacagtgtgtgtgtgtgcagccacACAGCTGTAGGCATCGTAGGTGATCTGCCACATACAGCTGAACTGACCGGGGGATAATAGTATGATAAAATCGAGAATCATGATAAATGATGAGGCTGGATTAGAATCCAGCGTGGTCTCTCCACTCGAGGCATTGTTGAGTCCATATCTGAAATGTGGGCCTTCATCATTCACGTCTGAtgtcatgtgtgtttgtttttgttttttttccaaaccttCCAGCTTATACTTGTGTTGTGAACAGAATTACAGGATTGCTTTCTCTGAGAAGGAACCCTCTAAGGAACCTTAGGGGACAGACTCTGACAGATCTTCCTGTCCAAAAATGCTGCCTGCTTAGGCAGCCTTCTTTCTGAGTGATGCACAGCCAGATGCTGACTATGACAACATTGTGCATGTTGAATGTGCTAATATATTGTGTAATTGATGATTGGCACATTTATTATTgtactacttcttcttctttttcttcttcttgcatTCCAGGTAGATCCAGTGACACGTCTTCCATGttgtgcatttctttttctctgttatatgtgtaaaatgtgtaaaggaagaagaagatgaatgtagcaacactgtttttttttaaatatagtaatCCTGTATCACTACCACAACACAAATCAgaatcatttgtatttattttgatatttaatccgcttattttaattcattagaGAACTTGAATATGTTGCGGGCGAGAAACAATCTGACTCATAAAACctgaaagtgtgtatgtaataACGATAGGCCCCACTCTAATACTGATTTAATGTGCCCTTCACCACTTCCCTTCGGCTCTACTGGAGTGCGTAAGATGAGGGGTCGAGTGGCCATCACTTGAGATATGAGTTTTTGGAAGTTGTTACCTTGAAGGCCATGCTGCAGTCTGAGGCCGTTTCCTTTTCCAAATGGTGGACAAAGCTGTTTATCAGAAGCAATAAAACTTCAAACTCATGATTATACGAAGGACATGTTTAAAGCTGTATTGGAGCGTGGGGATGTTTATAGACTTGAACCccgatgcacacacactctatgaCTTGAACAGCTTtgatttattgtattttgtCTCAGCCATAATGTTATGATTGCACTGTATGTTGCTGgggttttcatttgtttttttacatcacattgGGCATCTGATTTAGTCTTAactcctgatttttttttttttaatgaaaattgtgTGCAACGAAACCAAACCACAATGTACAGTTTGCCTCTGAAATGCTGCAACTGCTGTACTGCAATTAGATTgatatttacaaagaaataaattCTGTTATTAATTTTA
>XM_026916694.2
GTGCCCGCGTCTCCCATACCGGCTCGAGCCGGTATAAAAATCTGccaggagaaagacagagaaagagaaagaaagagagagggagagagagagagagagggggtaaAAAGGGGGGAAAGACGAGGACAGACCGGTTATATAGGTGATGCTCGCGCTGGAAACGGAGTTACAGATGAATTAGAGCACGCGAGCGGTAATAGTGTGAGTTGGAGCCTCTGTAACAGCGGTACTTTTACCCACAGAGGAATAAACCGCTCTACATTCACAGTGTTACTGCTGAGTTCTGGGGAAAAGTAGCTCGGGAACGTGAAGATGCTGGTCAGGTTGCTGAAAGGAAGGTAGCCCGGGATTGTACTGTTGCTATTTTTGTAAGTGGACCACCGaatattttccacatttttgcCCAGTCAGGATTTTTTTGGACGTGACGAGTCGACCATGATGGGACCGATGCCCACTCTGCGCGGCTGCATGAAACCCAACGTCTACTCGCAGGTTCCTGATGGAGGCTGGGGCTGGGTCGTGGCCGTGGCTTTCTTCCTCGTGGAGGTTTTCACTTACGGCATCATCAAGATCTTCGGCATCTTCTTGCAGGACCTCACCAACCATTTCGGAGAGACAAACAGCCGGGTGTCCTGGATCGTCTCCATCTGTGTCTTCATCATGTCCTTCACAGctCCTCTCTCCTCAGTGCTGAGTAACCGGTTTGGATTTCGGCCGGTTGTGATGGTCGGGGGTGTCCTGATCAGTTTGGGTACCGTCACCACCGCCTTCACTACGTCCATCACTCAGATGTACATCACCACAGGACTCGTTGCAGGCCTCGGTTACTGCCTCACTTTCCTGCCCACTGTCACCATCCTCTCGCAGTACTTCAACAAGCGCAGGTCACTCGTCACGTCCATCGCCTCCACCGGAGAGTGCTTCTCACTTTTCGCCTTGGCTCCAGCCTTCAGCGCCTTGAAAGACCAGGTTGGCTGGCGTAACTGCATGATTGTCATAGGGCTCCTACAGGcttctgtgattggctgtggaGCCCTGCTCAGACCAATCATCATACAGCCTGAATGTTCTAAGCAGGAAGAGGAACTGGCAGGTCCTCAGTCTCCCCTTAAAACGAATCCTGAAAACAAATACGAGCTGGAGAACGAGTTCACGCGCACGTCGTTGAACTCCGTCGACTCCGGCGTTCAGTCCATCTCCTCGGGAGAGCAGAACGTGGCCTTGTCCAACATCTCAGAAACAGATCTGGAGGAGGTGGAGAAAGGAGAGAGTGAAGATGATCAGGCACTGCCTTCCATTCctctaaaacaaaaacagaacgaggagagaaaaaggaaacGCCTCGATTTATCGCTGCTAAAAGACATCAGCTTCATTTTCTACTCTCTCTTTGGCCTCTTTGCCTCGCTGGGTTTTTTTGCACCACAGCTCTACCTGATTGAGCTGAGTGTGTCATACGGGGTGCAGCGCAACAAGGCCACTTACATGCTCTCCATCATGGCTGCGGCTGAGATTTTTGGCCGCCTGTCCATCGGCTGGATAATGAACCGCAGGCCCATCCGCAAAATCTACATCCTGCTGATCTGCACGGTGCTGCTGTGCCTGGTGCTCGCACTCTTCCCTGCCTTCTCCTCACATTTCTGGGCACTCGCTTCCTGCTGCGCCATCTGCGGCTTCCTGTTTGGCACGGTCGCCTCCACCCACATCCCCATGCTGGCCGAGGACGATGTGTTGGGCATGGAGAGGATGACGATGGGTGCCGGAGTTTACGTTTTCATCCAGAGCTTTGCTGGCCTCGCCGGTCCACCACTCGCAGGCGTGTTGGTGGACAAGATGAAGGATTACGGCTTGGCGTTTTACTCCAGCGCGGCCGGGGTGTGTGTCGGcgcttttttcctctcactggTGCGACCGGCTAAAACCGGTTGGAGCTGCTGCAGGAGGGACAGGAAGCGTGtagaacaggaacaggaagttaCGCCGGATGACTTCCTGGAAGTGGACATAATTCTGGAGAGCAGTGAGGCGAAAAAGAACATGGCACAAGTCTGAGATACAAACATACACGCACatgaacacgcacacacaagacTTGAACAATACACCCAAAGATGGACGTTATGGATGTTGATTCCTTTTTTTGTGCCTCATTTTCTCTccaattgtatttttttttatgttagtttttttttttgagaccaAATGAAACCTCAAGCTGGTGATGCTGCTGTTCTCATTAACATAGtcttgattttattattttgtgtagagGTTGTGTCGATCTCAGTAAGGATGAACGATATGTTACAGAGGATACGTTACATCACCAGTTAGCATTGTTTTCGACAATACCAGGTCGCCAACTGTTTTATCCTTTTCCTTGTTAAGTAATTTATTTGTCAAAACATGTGGCAGTATTTAAAAAGATGAATTCCAGTGCAGAACAATGActgtaagctttttttttcctaagctCTAAAAAGCTAGCTGTTGCGATACATCCTCATATCGCCTGGCCCTGTCTCAGCactgtattattttatgtaGTTTACACCACAGTTTGTTTCTGGATCCATAACGGCGCTTATTAGAGAGCAATTTCGCCAAAATTTCTCAATGTCAACATAATTTGCTTGATGAGAAatacaaaatcatgcagagtgttttaataaaaaaatggttGAGTTTGAATCGGTCACAATGGCAGAGAGAGGAATCAGTGATCCAATGCACTTAAAGCGTGACACTATACAAAGCGGGTGTGGTCATTAATATGGGGCGGAGTTaagttcaaatagctgtttctcagaaacagtaagtggattttttttttgatgatgacctgatcatttaaaaacagctgccatcagccaatcaactttcagcaggcatttgacaagGTTTCCATTTTTTCACTGAAGAAGGTTTGTTACAGTGAAAGTTCTCCTCATTCGTTGTTTTAAACCATAAGAATTTGCCTTTTGGATcatttagccccgcccactctcATTCCTAGGATTTTGCTGTATCTTCCAAGGATTCAGTAGACCCTGAcactcaataattatcaaaaacattatGAGATTTGAAAACAATTTGGTCACCACATGCCAATCTCATGAGAGGGTGGAGCTTAATTTACTCAAATAGCCGAAACTTATGATTGAGTgcatggattcacaaaaaaattgaaGGACAAGATTCTGATTCTCGGGTTATTCATGAGGGGGCGGGTTTTgttcaaatagctgtttctcagaCACGGTAAGTctgatcaagctgaaatttaGTGTACTATGTTTTTATACTAATCTATAATTGGATTTCTGATGaggttacttaaaaaaaaacaatcagctcTCAGCAGGCTTCTGAGAGAGTTAGAACTGAGGTATTGTAACAAAATTTGAACAAAactaatttattataaaattgtatatacagtaaagaaATCAGAGTTTGTCTATTTTTCTAGAATGTACCTTTTTGATAAACACTCTGCATGACTTTGTTCACTTCTCAACTGAAGAATAATGCTGACATTTTGAATTTAAGCatctctgtttatgtttttattactacagtgtgtgtgtgtgcagccacACAGCTGTAGGCATCGTAGGTGATCTGCCACATACAGCTGAACTGACCGGGGGATAATAGTATGATAAAATCGAGAATCATGATAAATGATGAGGCTGGATTAGAATCCAGCGTGGTCTCTCCACTCGAGGCATTGTTGAGTCCATATCTGAAATGTGGGCCTTCATCATTCACGTCTGAtgtcatgtgtgtttgtttttgttttttttccaaaccttCCAGCTTATACTTGTGTTGTGAACAGAATTACAGGATTGCTTTCTCTGAGAAGGAACCCTCTAAGGAACCTTAGGGGACAGACTCTGACAGATCTTCCTGTCCAAAAATGCTGCCTGCTTAGGCAGCCTTCTTTCTGAGTGATGCACAGCCAGATGCTGACTATGACAACATTGTGCATGTTGAATGTGCTAATATATTGTGTAATTGATGATTGGCACATTTATTATTgtactacttcttcttctttttcttcttcttgcatTCCAGGTAGATCCAGTGACACGTCTTCCATGttgtgcatttctttttctctgttatatgtgtaaaatgtgtaaaggaagaagaagatgaatgtagcaacactgtttttttttaaatatagtaatCCTGTATCACTACCACAACACAAATCAgaatcatttgtatttattttgatatttaatccgcttattttaattcattagaGAACTTGAATATGTTGCGGGCGAGAAACAATCTGACTCATAAAACctgaaagtgtgtatgtaataACGATAGGCCCCACTCTAATACTGATTTAATGTGCCCTTCACCACTTCCCTTCGGCTCTACTGGAGTGCGTAAGATGAGGGGTCGAGTGGCCATCACTTGAGATATGAGTTTTTGGAAGTTGTTACCTTGAAGGCCATGCTGCAGTCTGAGGCCGTTTCCTTTTCCAAATGGTGGACAAAGCTGTTTATCAGAAGCAATAAAACTTCAAACTCATGATTATACGAAGGACATGTTTAAAGCTGTATTGGAGCGTGGGGATGTTTATAGACTTGAACCccgatgcacacacactctatgaCTTGAACAGCTTtgatttattgtattttgtCTCAGCCATAATGTTATGATTGCACTGTATGTTGCTGgggttttcatttgtttttttacatcacattgGGCATCTGATTTAGTCTTAactcctgatttttttttttttaatgaaaattgtgTGCAACGAAACCAAACCACAATGTACAGTTTGCCTCTGAAATGCTGCAACTGCTGTACTGCAATTAGATTgatatttacaaagaaataaattCTGTTATTAATTTTA

Function

NR:

description
PREDICTED: monocarboxylate transporter 7-like

GO: NA

KEGG:

id description
K08183 SLC16A6; MFS transporter, MCT family, solute carrier family 16 (monocarboxylic acid transporters), member 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916693.2 True 4986 mRNA 0.44 7 3723763 3733885
XM_026916694.2 False 4912 mRNA 0.44 6 3723763 3733885

Neighbor

gene id symbol gene type direction distance location
wipi1 wipi1,LOC107719990,LOC105899989,LOC107654490,LOC107590389,LOC107688112 coding upstream 9681 3694729 ~ 3714082 (+)
zgc:86896 LOC108259475,LOC108436955,LOC107590453,LOC105899990,LOC107719989,LOC107601274,LOC107654493 coding upstream 31396 3685478 ~ 3692367 (+)
dus1l dus1l,LOC107590391,LOC107654489,LOC107688109,LOC107601270 coding upstream 83892 3630439 ~ 3639871 (+)
ppl ppl,LOC107720077 coding upstream 163085 3541110 ~ 3560678 (+)
rrn3 rrn3,LOC104947155 coding upstream 223335 3485744 ~ 3500428 (+)
LOC113528497 NA coding downstream 3575 3737460 ~ 3742455 (+)
LOC113527907 LOC108259599 coding downstream 13616 3747501 ~ 3756184 (+)
rnf113a rnf113a,LOC107693494 coding downstream 176320 3910205 ~ 3916855 (+)
ddx42 ddx42,LOC102777021 coding downstream 201511 3935396 ~ 3947545 (+)
LOC113528362 NA coding downstream 215031 3948916 ~ 3950931 (+)
G204773 NA non-coding upstream 8183 3672984 ~ 3715580 (+)
G204774 NA non-coding upstream 74225 3648189 ~ 3649538 (+)
G204790 NA non-coding upstream 77088 3645763 ~ 3646675 (+)
G204771 NA non-coding upstream 133732 3587902 ~ 3590031 (+)
G204679 NA non-coding upstream 320416 3399769 ~ 3403347 (+)
G204815 NA non-coding downstream 42719 3776604 ~ 3786578 (+)
G204832 NA non-coding downstream 119611 3853496 ~ 3882959 (+)
LOC113528035 NA non-coding downstream 122169 3856054 ~ 3868097 (+)
G204860 NA non-coding downstream 131028 3864913 ~ 3869743 (+)
G204912 NA non-coding downstream 372058 4105943 ~ 4107728 (+)
glyr1 glyr1,LOC107688117,LOC107590383,LOC107721499 other upstream 62599 3534289 ~ 3661164 (+)
LOC113527909 NA other upstream 523630 3192704 ~ 3200133 (+)
pyya LOC108276154,LOC108434917 other upstream 710904 3003608 ~ 3012859 (+)
LOC113528221 LOC108276032,LOC108276106 other upstream 815720 2867768 ~ 2908043 (+)
rundc1 rundc1 other upstream 1537599 2177683 ~ 2186164 (+)
limd2 limd2,LOC107674139,LOC107658411 other downstream 232848 3966733 ~ 3986284 (+)
trnae-cuc_26 NA other downstream 237294 3971179 ~ 3971250 (+)
plekhh3 plekhh3,LOC107601293,LOC107720008,LOC107688129 other downstream 886333 4620218 ~ 4670646 (+)
retreg3 fam134c other downstream 958592 4692477 ~ 4711316 (+)
psmc3ip psmc3ip other downstream 978988 4712873 ~ 4721468 (+)

Expression


Co-expression Network