spry1 (spry1)


Basic Information

Item Value
gene id spry1
gene name spry1
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 20900057 ~ 20905271 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU254118
ATTTCTTAAAGCACCCACATATATTCCTTACGTTTATACCACTTTTTAACTACCTGTTTATGCTTTATGATCCCCCTTTCCATCTGTTTTTACCCCCTCCTCCCCAGTCTCTCCGGCTCATCCCGGgccccaggtttttttttttttttttaacaaaaccagTGTTTGCCTTAAACTGACTGCGGGTCTGCTCAGCTACTCGATAAAGAGAcaaagtgaaaaggaaaaaaaaaaagagagaacagacAGAAGAAGAAATTTTTAAGTAAACGAGAGAGACATACCGAACCGAATCTGTGAAGGACTGTCCGGCCAGCCCATAATACTGTAGCTGTTCCCAGATCGCCGTAGCAACCTGGTATTGTTCCCACACAGAGGGCTTCCCGTGCCTTCCCGCGGGTCGTCTCCGTGGAAACGACCCCTCCGTCTGGTAGTGTTTCCGGACGGACAGACGGGTGGacgttcaaacacacacacacaaacacacacacgtacacacactccGTGGCATTCTGACATTatggttttttgttgttgtttgttgtttttattgttttgttttctctccccttttctcatatttttgtaaaaaaaaaattgtatgttCAAATCCATCAGAGGAATCCtggctattttttaaaaagttacaaaaaagaaaatgtctgtttaaaaacatttgtttttgtcattgtaaaaaaaaatatttattaagtgaagctctattattttatgatatttattgcGAAACAAAGACAGTCTTAGATTTACTCATGTCTGAATATAACAGAAATATCAATACTGAGAAATTAAAGGGTGACACAAACGTTATGTTAACTTTACT
>XM_026916521.2
AAAGCTCTCATTCATCTCGGCGAGCCTCTGacgacagagagaaagagagcgcgAGCGAGAGGCAACAGACACGACTCGCTTTTCCAACGGCTTTTTTTAATGCTGCgcggagaaaaaaaagaaaagaaaaacaacttgttattttgagccaaaaaaaaagccGAGTGGGACTTAAACTATTTTCATACCCGGATATTACTGGCGAGGTATAAACCCAACACGGTTGGTGTGTGAGGAGGaattttgtgttaatgtttttaacccGAATGGTTTCGTCGTTCTCGGGACAAAAACGGGGCgcttttttcccttcagctcGGCGTCACTGGGTGCGCAGCCTCACGCGTGGATTTTAAccttgttgtggtttttttgtgtatataaaaaaaaggagCGAATTTAGACCATACGGAATAGCCAGAGAGGTTCTGCACCGCTGTGTATGGATATTAAGTACCAGGTTGATGAGCCCTAAACGCTGTTTTGAGACTGATTTTGGAAGTGCAACATCGGCTGATGGAGTTAACGTTATGGAGGATCGCGTATAGGTTCTCCGATGTTCCCGGACTGCACCGTTCCACAGGAAGTCGTTGATTCGGTCAGATGGATCGTGGAGGCCACGTGGGTGCCGTTCTCTCTCTGGATCAGATCCGCTCCATACGCTCCAAGAACGAGTACACCGAAGGCCCCGTGACGTCAACGGCATCATCATCACCGTCGTCTGCGACGTCGACGCGGCAACCGTCTGCGCCGTCGTCGTGGCGCCCGTCGCCGCCTCCCCGGACGCTGAAGCACGAGAGGACTCACGAGGTCATCGTGGTAAACgttaacaacaacaattacGGAAGCGGCGGCACCGGCGGTGGCTTCTCTCCTTCCTCGGGAAGCTCGCCGCCTTTCCGCCATGTGGTTAGGACGCAGCCCAAATCGCAGATGGCGCCCTTGCGGCCTCTGTTCCCTCCCTCGGACACTCTGTTGATGTCGAAGCAGGCAAAATCGAAGGGCGAGTCGTTGTTATCGTCATCGTCTTCGTCGTCCTCGTCGTCCTCGTCGCACCAGCTGATCTGCGAGAGCTGTGGGAAGTGTAAGTGCGTCGAGTGCACTTCGCCAAGACCCCTTCCCTCGCGGATGGTGTGCGACGGCCAGTGCGTGTGCTCGGCTGAGAGCGTGCTGGAGCACGGCACGTGCATGTGCCTGGTCAAGGGCCTTTTCTACCACTGCTCGAGTGAGGGTGGAGATGATGCGGGCGACTCGTGCGCTGACCGACCGTGCTCACTGTCGCGGCCCCGCTGCCCGGCGCGCTTCCTCTGCATGGCTCTCATGGCACCCGTCTTCCCCTGCCTGCTCTGCTACCCTCCCTGCAAAGGGTGCCTGAAAGTGTGCCAGGTGTGCCACGACCGCCTGCGCCGCCCCGGCTGTCGCTGCAAGAACTCAAACGCCGTCTACTGCTGGAGGGACGGGCAGGGACACACGCTCACGCCGGGCAAACCTACCTGAGCGGGACCGGACACACAAACGAGACACTAACAAACACGGAGCCGAAAACACAGGCACTAACACACGCAGGATTAAGGGCTTATTTTTTTTGGCCCCATTCGGCTTCCATACTCAAGCTAAAACATGCAGAGCCGAATACGtgctaacacacacagcagggagTCCAAATCCACGCTAACAAACACACTGAGGTCTGAATGTGTGCCAGGCATGTGCCGGTAATTAGTTATGCAATGACAAGAAATTCAATATTGTTATCGTGGAGGCTTTGAAATCTCATCAGTGCCACTGTGGTGTGAGGACAGCTGTGTCTTCATCTTTGCCAGCATgggcaatcccataattctctAATGTGCATTGCGTAAATATCAAAAACAGTGCTAAGATGTTGTAATATCGCAATATTAAAAGTGTAAAACGGCACATGCCTTAAAAAAGCGCTAACATACAGTGCGGGACGCAGACTGACGGCGAGTCCCAGGACACACAACACCGATCCGGGAGGAAGAGGACGGACAATGATATCCTGACTATGCTCTAAATAAGCCCCGCCTGTTCCTCACCGATCTGCTGCTAGGAGGATGGAGGATGAAAAACGCAAAACCACTCGTTTATTATCTGTCActtggcagtttttttttttgttttgttttgttttgtttttttttttttttttaacaaaaccagTGTTTGCCTTAAACTGACTGCGGGTCTGCTCAGCTACTCGATAAAGAGAcaaagtgaaaaggaaaaaaaaaaagagagaacagacAGAAGAAGAAATTTTTAAGTAAACGAGAGAGACATACCGAACCGAATCTGTGAAGGACTGTCCGGCCAGCCCATAATACTGTAGCTGTTCCCAGATCGCCGTAGCAACCTGGTATTGTTCCCACACAGAGGGCTTCCCGTGCCTTCCCGCGGGTCGTCTCCGTGGAAACGACCCCTCCGTCTGGTAGTGTTTCCGGACGGACAGACGGGTGGacgttcaaacacacacacacaaacacacacacgtacacacactccGTGGCATTCTGACATTatggttttttgttgttgtttgttgtttttattgttttgttttctctccccttttctcatatttttgtaaaaaaaaaattgtatgttCAAATCCATCAGAGGAATCCtggctattttttaaaaagttacaaaaaagaaaatgtctgtttaaaaacatttgtttttgtcattgtaaaaaaaaatatttattaagtgaagctctattattttatgatatttattgcGAAACAAAGACAGTCTTAGATTTACTCATGTCTGAATATAACAGAAATATCAATACTGAGAAATTAAAGGGTGACACAAACGTTATGTTAACTTTACTGCAGAAATATATGAATTAACTAATAACA

Function

symbol description
spry1 Predicted to be involved in animal organ development and negative regulation of signal transduction. Predicted to act upstream of or within negative regulation of ERK1 and ERK2 cascade; negative regulation of cell population proliferation; and organ induction. Predicted to be located in cytoplasm and membrane. Predicted to be active in cytosol. Is expressed in several structures, including fin; gill; hindbrain neural keel; mesoderm; and nervous system. Orthologous to human SPRY1 (sprouty RTK signaling antagonist 1).

NR:

description
PREDICTED: protein sprouty homolog 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU254118 False 841 lncRNA 0.39 2 20900085 20904041
XM_026916521.2 True 2891 mRNA 0.49 2 20900057 20905271

Neighbor

gene id symbol gene type direction distance location
LOC113528637 fat4,LOC107717300,LOC107694441 coding downstream 202897 20607624 ~ 20697160 (-)
LOC113528321 fbxl12 coding downstream 469542 20426759 ~ 20430515 (-)
tmem107 tmem107,LOC108274527 coding downstream 475385 20419758 ~ 20424672 (-)
aurkb aurkb,plk4,LOC108431899,LOC107704466,LOC107712916,LOC107705065,LOC105908766 coding downstream 481676 20414100 ~ 20418381 (-)
trnal-aag_9 NA coding downstream 487127 20412849 ~ 20412930 (-)
LOC113528290 LOC108273900 coding upstream 176748 21082019 ~ 21143863 (-)
LOC113528020 LOC108274616,LOC107676766,LOC108242416,LOC103365636,LOC107660492,LOC107088227 coding upstream 241795 21147066 ~ 21155800 (-)
ube2ka ube2kb,ube2k,LOC108261162,LOC107750257,LOC107559588,LOC107684862,LOC100708886,LOC105026169 coding upstream 252209 21157480 ~ 21163061 (-)
klb klb coding upstream 260580 21165851 ~ 21174532 (-)
ints10 ints10,LOC105894096,LOC105894103 coding upstream 279691 21184962 ~ 21201869 (-)
G214526 NA non-coding downstream 58423 20841431 ~ 20841634 (-)
G214493 NA non-coding downstream 118355 20778765 ~ 20781702 (-)
G214331 NA non-coding downstream 454309 20445523 ~ 20445748 (-)
G214325 NA non-coding downstream 461223 20436052 ~ 20438834 (-)
G214159 NA non-coding downstream 843913 20020552 ~ 20056144 (-)
G214917 NA non-coding upstream 422389 21327660 ~ 21329675 (-)
G214933 NA non-coding upstream 454426 21359697 ~ 21359899 (-)
G214941 NA non-coding upstream 501599 21406870 ~ 21458183 (-)
G214947 NA non-coding upstream 514497 21419768 ~ 21468331 (-)
G214949 LOC108280967,LOC108280981,LOC108277545 non-coding upstream 530323 21435594 ~ 21505792 (-)
hs3st1 hs3st1 other downstream 686428 20205339 ~ 20213629 (-)
slc2a9l2 slc2a9 other downstream 761844 20039787 ~ 20138213 (-)
lyar lyar other downstream 915908 19940354 ~ 19984149 (-)
rbbp6 rbbp6 other downstream 1451498 19429217 ~ 19448559 (-)
si:dkey-204f11.64 LOC108274053 other downstream 2072323 18823471 ~ 18827734 (-)
fgf2 fgf2,LOC107717315 other upstream 109168 21014439 ~ 21028081 (-)
slc16a2 LOC108279893,LOC107596364 other upstream 331531 21236802 ~ 21272507 (-)
LOC113528016 thegl other upstream 447010 21352281 ~ 21359190 (-)
G215187 NA other upstream 771000 21676271 ~ 22269092 (-)
G215188 NA other upstream 780433 21685704 ~ 21970414 (-)

Expression


Co-expression Network