LOC113528048 (cacng2a,cacng2,LOC108275959,LOC107732897,LOC107680886,LOC107561356,LOC107687643,LOC107729558,LOC108434911)


Basic Information

Item Value
gene id LOC113528048
gene name cacng2a,cacng2,LOC108275959,LOC107732897,LOC107680886,LOC107561356,LOC107687643,LOC107729558,LOC108434911
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 3088362 ~ 3146182 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026916304.2
CTTTAGCTGGTCTTATTGCAGAAAAGGAGCAGGAGAAAGAAGCACAGCACCAGCCGAAGAGGCTTTTCCAAATTTCTTCCCTAATCAGTAATCGTACAAACGCAACCATAAGGTTCCCAGCGCGTCCGCCTCCTTCCCCCTCCTTCCGCTCCAACCTGTCCCGTTTTTTCCATTCGTTCCGCTCCCCTCCGTTCTCCAATATTTATTTCCTGTACGTGAAGAGGAAAGGGGGTCCCCCCGTCGTGCAATGCAGCAACATGGGCACGTTTGACCGCGGCGTGCAGATGCTGCTGAGCACGGTGGGCGCGTTTGCCGCGTTCAGCCTCATGACCATCGCCGTGGGCACAGACTACTGGCTGTACTCGCGCGGCGTCTGCAAGATCAAGACATCCAACGAGAATGAGACCAGCAAGAAGAACGAGGAGGTCATGACCCACTCGGGCCTGTGGAGGACATGCTGCTTGGAAGGAACCTTCAAAGGACTGTGCAAGCAGATCGATCACTTCCCGGAAGACGCCGATTACAAAGCAGACGCCTCCGAGTACTTCTTACGTGCTGTGAGAGCATCCAGCATCTTCCCCATCCTCAGCGTGATCCTGCTCTTCATGGGAGGCCTGTGTATAGCTGCCAGCGAATTCTACAAGTCCCGCCACAACATCATCCTCAGCGCCGGAATCCTCTTCGTCTCTGCAGGTCTCAGTAATATCATCGGCATGATCGTGTACATATCAGCGAACGCAGGCGACCCCACCAAGAGCGACTCGAAGAAGAACAGCTACTCGTACGGCTGGAGCTTCTACTTCGGTGCGCTGTCCTTCATCATGGCCGAGATGGTGGGAGTCCTGGCTGTGCACATGTTCATCGATCGGCACCGAGAGTTGAGATCGGGCGTGAGGGCCGCCGATTACCTGCATGGTTCAGCCATTACACGAATCCCCAGCTATCGCTACCGCTACCGGCGCCGCTCACGCTCGAATTCTCAGTCGCGTTCCTCATCACGCTCGACAGAGCGCTCACAGTCACGTGAAGCCTCCCCGGTCGGTCTGAAAGGCTTCGGCACCCTGCCCTCCACCGAGATCTCCATGTACGCGCTAAAGGGGGGCCACGGCACCCCGACAGCCACCTACAACTCGGACAGGGACTTCCTCCAGGTCCACAACTGCATCCAGAAGGACCTGAAGGACTCGGCTCACGGAAACTCAGCCAACCGACGCACCACGCCGGTATGAGGAACCCCATCCCCGCTGAAATAAACACGACAAGGGGCAACAAGATCAGAGCCCTAAAATTTTACCGCTCAAATTTCATGTACCGTGAGTTCTCATGATTAGGAAGAGCTAGGCGGAGTTCCTGTTCTTTTCCACAGTCTGTCAtgtttgcatgatttttttcccgCCATTTTATCTTAGATCAAACCAGCTTGGGTGTGTGAATTTAGGTGCGTTATTAGACACACTGGCCCTGAATTTTATTACCATTCCTAACACGCCTTCGTCGACTTTCCCTTAGAAGAGTGGGCACTTGCAGTGAAATTTTCAAGAGGAAAACACTCGACCTTGGCGTCGAAACAATCTCCATGGCAATTAACTTTTTTTGACCCATGAGTCATATTGGCTTGCTAATTCGCTAgcaacacagtaacacagtttCTTTGGCTGTCAGTGCAGGTGAAGAACTTGGAGTAATCCCAGTTTGATATTTGAcatgctgaatttttttaattagaactGTTTGGTCCTTTTTTACACTTAAAAGCAGCTTCATCCACCATTTTCTAGGAAGGCTAATGCTCCTGAAATCTACTCGGGCGATGATCCCTCGTGTAATAATCTTCGCTTTAGCTAATAAAATGTTGTTCTTGCTCTTAAGATGGCGCCAGAATTTAACCGAGGAAAAAAACGTGAAAGGAAGTCAATAAGGGCGTGTTAAAGTGTGGTACTGAAACAAGGCCCAgggtaaaaacaaaaagcttgtACTTTCTTTTACGCTTGTACGTACTGATTTGATCATTTGtgattttgtttgctttttatttatttatctatttttacataaaaactGTGAAACACCGCGGTAGGGATTTCAGTAAGGAGTAGCCCAGACTGCAAACAAAgctatacattatataaatatatataatgtattaattttctAACTTATTTAAAGACTTTTctgaagtgcaaaaaaaaaatctaacaaaaatggacaagaatacacacacaaagtgcaaaACTGGCGGGTGATGAGAAACCGAGCGACgtggagaaagaaagtaaaagtgaaaaaacGCCAAGATTTTCCACCACAAAGCTGCTGGAACAAAGAGACACTTTTGACTTTCGATGAAAAATCTATTCTTTTAAAACGAACCTTCTCATCTTTTGCTCCGTCCCTGTccgctttctttattttcctccTCCCGCCTTCAGCCACCGAGGGAGCGCAGAACCGAGCGAAAGGCAGCCGCTGAAGgggaaaggtcagaggtcaactGATGGACTCCAGGATCCACTGCCAAGATGGaggatgaaaaaaaagcaaggaGGAGAGGGCGAGGAAAAAGACGAGGATGCTGAACACTTAATCCTTGCGGGGAAAAAAGCAAGTGACAAAATTAACAATGAAACGTTACAAGACATGAAGCTAAGTAACTCATGAATAATACAGAAATTAAATGCATGCTATAAATTTACAGAAAATCTGCTCTTGAGACGTTTTAAAGGATAACAATAATTATAACGGGGAAAAAAGCAATGCTAAAAAACTTTAATgtgtactttttcttttcttttcttttcttttttaaatccaattcaTTATACGGCTTTGGTAACAAATCAACCTACTACTATCTTTGActgctttttacattttttgttcattctttctatgtaaatgtacatatttcattttgaaaatcaCACAGCCttagccatgtttttttcctttaaaataatttcagtgTGTTGTTTCAAATGAACTCTAAAAGGTGCCAAAAACAGAATGATCCTCAACTTGGATGCATCAAGTTCTGATGAATAAAAGACGAACCCCAGGGGGAACAAAA

Function

symbol description
cacng2a Predicted to enable channel regulator activity and voltage-gated calcium channel activity. Acts upstream of or within AMPA selective glutamate receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of AMPA glutamate receptor complex. Predicted to be active in postsynaptic density membrane. Is expressed in brain and central nervous system. Human ortholog(s) of this gene implicated in autosomal dominant non-syndromic intellectual disability 10. Orthologous to human CACNG2 (calcium voltage-gated channel auxiliary subunit gamma 2).
cacng2 Predicted to enable channel regulator activity and voltage-gated calcium channel activity. Predicted to be involved in several processes, including neurotransmitter receptor internalization; neurotransmitter receptor transport, postsynaptic endosome to lysosome; and postsynaptic neurotransmitter receptor diffusion trapping. Predicted to act upstream of or within several processes, including membrane depolarization; membrane hyperpolarization; and neuromuscular junction development. Predicted to be located in endocytic vesicle membrane and plasma membrane. Predicted to be part of AMPA glutamate receptor complex. Predicted to be active in glutamatergic synapse; hippocampal mossy fiber to CA3 synapse; and postsynaptic density membrane. Predicted to be integral component of postsynaptic density membrane. Implicated in autosomal dominant non-syndromic intellectual disability 10.

GO:

id name namespace
GO:0070588 calcium ion transmembrane transport biological_process
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:0005245 voltage-gated calcium channel activity molecular_function

KEGG:

id description
K04867 CACNG2; voltage-dependent calcium channel gamma-2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026916304.2 True 3067 mRNA 0.46 4 3088362 3146182

Neighbor

gene id symbol gene type direction distance location
mpp2a mpp2a,LOC108276091,LOC108434916,LOC107582977,LOC107737744,LOC107758486 coding upstream 57198 3014983 ~ 3031164 (+)
LOC117598765 LOC108276106,LOC108276032,LOC108261353,LOC108261342 coding upstream 105271 2914258 ~ 2983091 (+)
LOC113528204 LOC108258307 coding upstream 151706 2918874 ~ 2936656 (+)
LOC117598987 LOC108276032 coding upstream 170817 2908172 ~ 2917545 (+)
hspb9 NA coding upstream 232109 2855396 ~ 2856253 (+)
kat7a LOC108275911,LOC108437993,LOC107689642,LOC107554133,LOC107737751 coding downstream 13751 3159933 ~ 3174285 (+)
zgc:113090 NA coding downstream 31367 3177549 ~ 3182903 (+)
zgc:153733 LOC108275998 coding downstream 75091 3221273 ~ 3231214 (+)
mylpfa mylpf,mylpfa,LOC107582990,LOC108249004,LOC108443170 coding downstream 89857 3236039 ~ 3241987 (+)
LOC117598988 tlr-5,LOC108275978,LOC108275971 coding downstream 129866 3276048 ~ 3289441 (+)
G204417 NA non-coding upstream 15636 3064905 ~ 3072726 (+)
G204410 NA non-coding upstream 52199 3034271 ~ 3036163 (+)
G204362 NA non-coding upstream 317052 2770686 ~ 2771310 (+)
G204323 NA non-coding upstream 351076 2544989 ~ 2737286 (+)
G204333 NA non-coding upstream 364553 2656576 ~ 2723809 (+)
G204633 cd2bp2,LOC107582988,LOC107729467 non-coding downstream 69605 3215787 ~ 3218884 (+)
G204678 NA non-coding downstream 207116 3353298 ~ 3356906 (+)
G204679 NA non-coding downstream 253587 3399769 ~ 3403347 (+)
G204771 NA non-coding downstream 441720 3587902 ~ 3590031 (+)
G204790 NA non-coding downstream 499581 3645763 ~ 3646675 (+)
pyya LOC108276154,LOC108434917 other upstream 75503 3003608 ~ 3012859 (+)
LOC113528221 LOC108276032,LOC108276106 other upstream 180319 2867768 ~ 2908043 (+)
rundc1 rundc1 other upstream 902198 2177683 ~ 2186164 (+)
ppfia3 ppfia3,LOC107551161,LOC107687647,LOC107563979,LOC107732887,LOC107729434 other upstream 1100447 1917205 ~ 1987915 (+)
ccndx LOC108280826 other upstream 1198847 1883052 ~ 1889515 (+)
LOC113527909 NA other downstream 46522 3192704 ~ 3200133 (+)
glyr1 glyr1,LOC107688117,LOC107590383,LOC107721499 other downstream 388107 3534289 ~ 3661164 (+)
limd2 limd2,LOC107674139,LOC107658411 other downstream 820551 3966733 ~ 3986284 (+)
trnae-cuc_26 NA other downstream 824997 3971179 ~ 3971250 (+)
plekhh3 plekhh3,LOC107601293,LOC107720008,LOC107688129 other downstream 1474036 4620218 ~ 4670646 (+)

Expression


Co-expression Network