ccndx (LOC108280826)


Basic Information

Item Value
gene id ccndx
gene name LOC108280826
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 1883052 ~ 1889515 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU241504
cctctccaccTGTTGATGCCATTGTTATCCCGATGGCATTGTGCCGTCTCTCTCTTCGTACACGCCTCCTTGTCACCGAGGGTATATAAAGAGagagcttcacacacacttcacttcacacactacacacacacacttcagcgcTGCAGACTCAGCAGAGATGTCCGTCTCTCTCTGGTGCGAGGAGGAGTCGGCGAGATCCGGGACGTCGGTCCGAGCGTCCTTCGACCCCAACGCCTCCGGGCTCAGGGTCATCGAGAGGCTGCTGCACTCTGAGGAGAGATACGCTCCGTCTCCGCTCTACGTCTCCCTCGTTCAGAGAGAACCCAAACGCAGGGAGGAACTCGCCAAGTGGACGCTCGAGGTGTGCTGTGATTGCGGATGTGACGAGGCCGTGTTTCCTCTCGCAGTCTCTCTGCTGGATCGCTACTTAGCCTCCACACTGTCTCTCCCCGTCTCCGCGTCCTGtctc
>XM_034310056.1
tctctctctctctctctctctctcctctccaccTGTTGATGCCATTGTTATCCCGATGGCATTGTGCCGTCTCTCTCTTCGTACACGCCTCCTTGTCACCGAGGGTATATAAAGAGagagcttcacacacacttcacttcacacactacacacacacacttcagcgcTGCAGACTCAGCAGAGATGTCCGTCTCTCTCTGGTGCGAGGAGGAGTCGGCGAGATCCGGGACGTCGGTCCGAGCGTCCTTCGACCCCAACGCCTCCGGGCTCAGGGTCATCGAGAGGCTGCTGCACTCTGAGGAGAGATACGCTCCGTCTCCGCTCTACGTCTCCCTCGTTCAGAGAGAACCCAAACGCAGGGAGGAACTCGCCAAGTGGACGCTCGAGGTGTGCTGTGATTGCGGATGTGACGAGGCCGTGTTTCCTCTCGCAGTCTCTCTGCTGGATCGCTACTTAGCCTCCACACTGTCTCTCCCCGTCTCCGCGTCCTGtctcaaattatatttaaaaaaaataaaaatttgGGTTCTCcagagagatacagagtgtAAGATTCAcccagatgagtgtgtgtgtgtgtgagactcatgTATTGTCTTGTCTGGTCTTGAACAGGAAATGGAGCGCGTGGTGTTGGGAACGCTGCGCTGGGACGTGGCCGGCGTCACCCCTCAGGACTTCATCCCTCACTTCCTGTCGTGTTTGGAGGAGCTGATGGGGGACAGCGAGGACGCCGCCGACTTCGTCTCCACGCTCAGACGCCACGGGGACACGCTGGCCGCCATGTGCGTGTGCGACTCTCGCTTCCTGGGAACTCGTCCGTCCCTGGTGGCCGCCGCCGCCCTCAACTCCGCTCTCCGGGGTCTGGAGGCCAAGAGGAGGCGGGAgatgagtcacatgacctgcacGCTGGCTACGCTGTGTCGCAGTGACCCGGCCGTGCTGCAGTGCTACAGCGAGCTGATAGAGGACGCTCTCAGGGAACGACTGAGGAACAGCCGAGAGCAGGAGGAAGACGACGGCGAGAagaatggagggatggaggaggagagatCGAGCACGCCGACTGACCTGAGAGAAATAGActtttaaaacaacacaaacgCACAAAACGCACATCCGCAGTCTTCCTCCTTCATCATCAGTAAAACTGATGTAAACTTCTAAATGCTGCatgataatgtttttaatgattttatttatttaagaattattcttatttatttctttattcgtTCAAGGTGTTCACTTTTGTTGAATTTGTTTATCGTGAGTTAATCTTTTGTTGATAcctgatatttattttttttttatc

Function

NR:

description
PREDICTED: G1/S-specific cyclin-D1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU241504 False 472 TUCP 0.58 2 1883075 1885478
XM_034310056.1 True 1315 mRNA 0.53 4 1883052 1889515

Neighbor

gene id symbol gene type direction distance location
tbc1d17 tbc1d17,LOC107551157,LOC107687627,LOC107729504,LOC107563983,LOC107680857 coding upstream 12882 1854742 ~ 1870170 (+)
zgc:195001 LOC108274956 coding upstream 43714 1828671 ~ 1839338 (+)
emc10 emc10 coding upstream 56984 1816311 ~ 1826068 (+)
lrrc4ba lrrc4b,lrrc4ba,LOC103034410,LOC107667844,LOC107680881,LOC107551155,LOC107563987,LOC107732840 coding upstream 159254 1678312 ~ 1723798 (+)
med25 med25 coding upstream 224756 1631072 ~ 1658296 (+)
nucb1 nucb1,LOC108434929,LOC107729549,LOC107687629,LOC107563981,LOC107732899 coding downstream 770 1890285 ~ 1903186 (+)
slc1a9 slc1a9,LOC108278773,LOC108434930,LOC107551162,LOC107680867,LOC107729473 coding downstream 122718 2012233 ~ 2061070 (+)
hsd17b14 hsd17b14,dhb14,LOC106606926 coding downstream 195037 2084552 ~ 2091453 (+)
bcat2 bcat2,LOC108278805,LOC108434932,LOC107680854,LOC107561362,LOC107687634,LOC105897681,LOC107729480 coding downstream 203044 2092559 ~ 2114069 (+)
grna NA coding downstream 241013 2130528 ~ 2174611 (+)
G203898 NA non-coding upstream 11492 1856423 ~ 1871560 (+)
G203867 NA non-coding upstream 16041 1772629 ~ 1867011 (+)
G203885 NA non-coding upstream 57759 1824978 ~ 1825293 (+)
G203672 NA non-coding upstream 316423 1565356 ~ 1566629 (+)
G203662 NA non-coding upstream 350007 1522226 ~ 1533045 (+)
G203906 NA non-coding downstream 16324 1905839 ~ 1922479 (+)
G203913 NA non-coding downstream 29508 1919023 ~ 1987215 (+)
G203935 NA non-coding downstream 118886 2008401 ~ 2008606 (+)
G203955 NA non-coding downstream 264921 2154436 ~ 2159283 (+)
G203965 NA non-coding downstream 308598 2198113 ~ 2198333 (+)
syt3 syt3,LOC107551154,LOC107563990,LOC107680842 other upstream 263078 1561524 ~ 1619974 (+)
kmt5c LOC108280634 other upstream 521592 1353329 ~ 1361460 (+)
paqr4a paqr4,LOC101165805,LOC105897660,LOC104930707,LOC108280840,LOC107658445,LOC106606885,LOC102784286 other upstream 645850 1220494 ~ 1237202 (+)
armc5 armc5 other upstream 826718 1034336 ~ 1056334 (+)
setd1a setd1a,LOC107737760,LOC107554121,LOC107729457 other upstream 1076707 778840 ~ 806345 (+)
ppfia3 ppfia3,LOC107551161,LOC107687647,LOC107563979,LOC107732887,LOC107729434 other downstream 27690 1917205 ~ 1987915 (+)
rundc1 rundc1 other downstream 288168 2177683 ~ 2186164 (+)
LOC113528221 LOC108276032,LOC108276106 other downstream 978253 2867768 ~ 2908043 (+)
pyya LOC108276154,LOC108434917 other downstream 1114093 3003608 ~ 3012859 (+)
LOC113527909 NA other downstream 1303189 3192704 ~ 3200133 (+)

Expression


Co-expression Network