paqr4a (paqr4,LOC101165805,LOC105897660,LOC104930707,LOC108280840,LOC107658445,LOC106606885,LOC102784286)


Basic Information

Item Value
gene id paqr4a
gene name paqr4,LOC101165805,LOC105897660,LOC104930707,LOC108280840,LOC107658445,LOC106606885,LOC102784286
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 1220494 ~ 1237202 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU240880
ACGCCGGTGTAGAAGATGGCAGAAGAGAGATGTTCAGGGGATTTTAGGCGGATTGGAGGTCAAAATTTGTTTCGAGGATAATCACACAGAAAAGTCggatcctgtgtgtgtgtgtgttttttacgCCAAGTTCCATTTTTCGGAATAAAATCAAGCTAGCCGGGGAGTGTGTTATGGTTTTTGCCCAGCTCCAGTCCCTCTGCCTGGCGGCCCATAGCGGCGAACAGCACCGGGCATGACCGCTGGCTCTGAACTGTGACTTTCTGCCTGATTTTCTAATAGGAATATCGATTAAATCTCACGTTATGATTTCGCTAATCTGACCGAATCAGCTGGTTTGGGGTTAGCAAGTGCGGCtacatgttagctagctatgagtgtgtgtgtatgtatgcctgtatgtatgtatgtgtttgtgtgcgcgcgcgtgcgtgcgcGTGCACGTGTATGGGGACACCCTGCTTAACTGACTCTAGATGTGATTgaatggagatttttttttattataaattgtgttctttgttgtttttatttttggtattttcacACCATTTACTATACCACATACTGAATACAAAAGAATTACAACGACTTTATTAAGCTGTAATGTTTATGAGAGAGCGTTAATCTATAACTAATCTTATTCGGTTTACATTGAAAACGTGAAAGAAAAAATCTAACAAATGAACACCAAGATTAAAATATGACATAAATCATATGCTTAAATACactaaatttaataaatgaccTAATTTCGACACGGTATAGTGTATAAATTGACTAAAATTGGTGAAATAAACTTTAACAGTTGGTTAATTACCGTGTTATAAACAGATAATTCATTTCTGTTCACCGAAATCCACTCCTCAGTCCTTAGAaccttttttatgattttattttagtcTCTAAAGacttaaaatgttatttttttaaaaggttttaagTGAATCTGAGGTCACGGTGAACTTATTGAACTTGAAACTTAGggttagcattagcatagcAGGTGGGGTGAATGTGAAGAAGTCAGTCAAAGCGGATGAAAATgagatttaattcatttttaaagtgttttatcaAACTTTCCAAGCAAGTGGCGATTttataagaaagaaaaggaaggaaaaaagattaGTCAATtcggctttttaaaaaaaaaaaatgatttaaaccgTCCTCTCGTTCCAacatgctaatgttgctaattaGCGTTTATGCAAATGACAGTTAGGCGCGAGCCGGTCAGGAGGCAGCGGTTAGCCCGCTAGCTAAGCTAGCAGAGTTAGCGCTCTGCTTTGTGGAGATGTCGGAAGATCGATGTGTTTGTGAGGTCGGatgtcagattttattttgtaggtgacattttgttgtttgtttttataaaaacaaatcaaacatttgAGATAATTGTGGCTGAAGTCAGGAAAAcggctccatttttttttttttttttaattcccctCAGCTCGCCATGGCAGCAGGCGCGCGCTCCACATCCCGATGCGCGCGCACCAGTCAGCAGTGTGTTTAATACAGACTGAGAGATTCTGCAGTGTATTGTGTTGCATGttgcatgttgtgtgtgtatgtgtgtgtatgtgtgtgtatgtgtgtgtatgtgtgtgtgtgggttttgttTGTGCAATGGCCTATCTAAATGGACCCAGATTACTGGACTGGGCGAACTCTCCTCCTCACCTCCAGTTCAATAGATACGTCCTGACCGGCTACAGACCCATCTCCTCCGTGCAGGACTGCATCAGGAGCCTGTTTTACCTGCACAATGAGCTGggaaacatctacacacacgGCATCCCTCTGCTGTGTTTCTTGGTGCTGCTCCCCCTCAACATGCCCTGGTCTCAGATCAGTGTGACGTGGCTGGGCGTGGTCCACTTCCTGGCCTGTTTGTCTCCTCAGCTCGGCTCCGTCCTCTATCACCTGTTCATGAACCACGAGGGCGGAGAACCCGTCTACAAAAAACTGCTCACCTTAGACATGTGCGGCATCTGCATGATTACCACTCTGGGCGCTCTGCCCATCGTCTACAGCACGCTGCTGTGCTACCCGTTGCTGCGCGGCGCCGCCCTGCTGGCCTACATCGCTCTGTCCAGTTACGCCATCCACTGCGCAGTGACGGCGCGGAGCAGCGTGCGCCGCTTGCGCTCGTTCGCCGGACAGGCGCTGTTTCGCTTCTTCTTCCTGG
>XM_026916889.2
AAAAACCGACTGATATGGACGCCGGTGTAGAAGATGGCAGAAGAGAGATGTTCAGGGGATTTTAGGCGGATTGGAGGTCAAAATTTGTTTCGAGGATAATCACACAGAAAAGTCggatcctgtgtgtgtgtgtgttttttacgCCAAGTTCCATTTTTCGGAATAAAATCAAGCTAGCCGGGGAGTGTGTTATGGTTTTTGCCCAGCTCCAGTCCCTCTGCCTGGCGGCCCATAGCGGCGAACAGCACCGGGCATGACCGCTGGCTCTGAACTGTGACTTTCTGCCTGATTTTCTAATAGGAATATCGATTAAATCTCACGTTATGATTTCGCTAATCTGACCGAATCAGCTGGTTTGGGGTTAGCAAGTGCGGCtacatgttagctagctatgagtgtgtgtgtatgtatgcctgtatgtatgtatgtgtttgtgtgcgcgcgcgtgcgtgcgcGTGCACGTGTATGGGGACACCCTGCTTAACTGACTCTAGATGTGATTgaatggagatttttttttattataaattgtgttctttgttgtttttatttttggtattttcacACCATTTACTATACCACATACTGAATACAAAAGAATTACAACGACTTTATTAAGCTGTAATGTTTATGAGAGAGCGTTAATCTATAACTAATCTTATTCGGTTTACATTGAAAACGTGAAAGAAAAAATCTAACAAATGAACACCAAGATTAAAATATGACATAAATCATATGCTTAAATACactaaatttaataaatgaccTAATTTCGACACGGTATAGTGTATAAATTGACTAAAATTGGTGAAATAAACTTTAACAGTTGGTTAATTACCGTGTTATAAACAGATAATTCATTTCTGTTCACCGAAATCCACTCCTCAGTCCTTAGAaccttttttatgattttattttagtcTCTAAAGacttaaaatgttatttttttaaaaggttttaagTGAATCTGAGGTCACGGTGAACTTATTGAACTTGAAACTTAGggttagcattagcatagcAGGTGGGGTGAATGTGAAGAAGTCAGTCAAAGCGGATGAAAATgagatttaattcatttttaaagtgttttatcaAACTTTCCAAGCAAGTGGCGATTttataagaaagaaaaggaaggaaaaaagattaGTCAATtcggctttttaaaaaaaaaaaatgatttaaaccgTCCTCTCGTTCCAacatgctaatgttgctaattaGCGTTTATGCAAATGACAGTTAGGCGCGAGCCGGTCAGGAGGCAGCGGTTAGCCCGCTAGCTAAGCTAGCAGAGTTAGCGCTCTGCTTTGTGGAGATGTCGGAAGATCGATGTGTTTGTGAGGTCGGatgtcagattttattttgtaggtgacattttgttgtttgtttttataaaaacaaatcaaacatttgAGATAATTGTGGCTGAAGTCAGGAAAAcggctccatttttttttttttttttaattcccctCAGCTCGCCATGGCAGCAGGCGCGCGCTCCACATCCCGATGCGCGCGCACCAGTCAGCAGTGTGTTTAATACAGACTGAGAGATTCTGCAGTGTATTGTGTTGCATGttgcatgttgtgtgtgtatgtgtgtgtatgtgtgtgtatgtgtgtgtatgtgtgtgtgtgggttttgttTGTGCAATGGCCTATCTAAATGGACCCAGATTACTGGACTGGGCGAACTCTCCTCCTCACCTCCAGTTCAATAGATACGTCCTGACCGGCTACAGACCCATCTCCTCCGTGCAGGACTGCATCAGGAGCCTGTTTTACCTGCACAATGAGCTGggaaacatctacacacacgGCATCCCTCTGCTGTGTTTCTTGGTGCTGCTCCCCCTCAACATGCCCTGGTCTCAGATCAGTGTGACGTGGCTGGGCGTGGTCCACTTCCTGGCCTGTTTGTCTCCTCAGCTCGGCTCCGTCCTCTATCACCTGTTCATGAACCACGAGGGCGGAGAACCCGTCTACAAAAAACTGCTCACCTTAGACATGTGCGGCATCTGCATGATTACCACTCTGGGCGCTCTGCCCATCGTCTACAGCACGCTGCTGTGCTACCCGTTGCTGCGCGGCGCCGCCCTGCTGGCCTACATCGCTCTGTCCAGTTACGCCATCCACTGCGCAGTGACGGCGCGGAGCAGCGTGCGCCGCTTGCGCTCGTTCGCCGGACAGGCGCTGTTTCGCTTCTTCTTCCTGGGGTTGCGGTGGGTGGGCGTGGGCGGGGGAAGCCCCACGTCGCTAAGACACTTCCTCACCATGGAGGCGCTGGCGGTGTTGGGCGGAGTCATCAACATCGCCCGCGTGCCCGAGCGCTTCTGCCCCGGTCTCTTTGACTACTGGTGCAACAGCCACCAGATCATGCACGTCCTGGTGGTCGGCTCCATCCTCTCGCTGCACTGGGGCGTCCTGGACGACCTGCTGTGGATCAACATCTACGACTGTCCGGCAGACTGACCTCTgattgacctctgacctctgggGCGGGGTTTTTTTTCAAGGAATCCTGTCCTGACTGGTCTCGAtgagatttcttttttctttttttttttctttgttttgttattagAATTTGACATGCATCAGGTTTTCTTTAGACTCAGGGAGGGGTCACAAgctctgacctttgacctcttgACTCTTGTTTGTATCCAGGGGGTTTGTGATTCATAGGATTCATTTGCAAACTTGGGATTCCTGTGTAGAgatctgacctttgacctcggGGTGCAGATTATTGTTCATCCTCGCAGTTCGACATGCATTAAGCACTGATAAGGGCGGGGATGT

Function

symbol description
paqr4 Predicted to enable signaling receptor activity. Predicted to be integral component of membrane.

NR:

description
progestin and adipoQ receptor family member 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU240880 False 2206 TUCP 0.44 3 1220512 1236612
XM_026916889.2 True 2814 mRNA 0.46 3 1220494 1237202

Neighbor

gene id symbol gene type direction distance location
LOC113528076 NA coding upstream 110356 1078439 ~ 1110138 (+)
LOC113528077 NA coding upstream 178044 1037151 ~ 1042450 (+)
elob tceb2,LOC108280902,LOC107564001,LOC103036770,LOC108427344,LOC105012960 coding upstream 186279 1021926 ~ 1034215 (+)
arl6ip1 arl6ip1,LOC107658451,LOC107674170,LOC107732869 coding upstream 205749 1000089 ~ 1014745 (+)
smg1 smg1,LOC107729485 coding upstream 222809 941020 ~ 997685 (+)
coro1a LOC103035240,LOC108427335,LOC108280773,LOC107658445,LOC107729508 coding downstream 16325 1253527 ~ 1266121 (+)
ppp1caa ppp1caa,LOC108280818,LOC105897688,LOC103034594,LOC103392690,LOC101477563,LOC103367324,LOC107378498 coding downstream 86898 1324100 ~ 1345037 (+)
shank1 shank1,LOC108427331,LOC107732841 coding downstream 164606 1401808 ~ 1494018 (+)
si:ch211-51c14.1 si:ch211-51c14.1,LOC108427330,LOC107732900,LOC107729493,LOC107551153,LOC108274951,LOC105012945 coding downstream 267676 1504878 ~ 1531986 (+)
med25 med25 coding downstream 393870 1631072 ~ 1658296 (+)
G203385 NA non-coding upstream 109647 1110529 ~ 1110847 (+)
LOC117598762 NA non-coding upstream 142068 1061190 ~ 1078426 (+)
G203327 NA non-coding upstream 159973 1058679 ~ 1060521 (+)
G203357 NA non-coding upstream 336128 817391 ~ 884366 (+)
G203339 NA non-coding upstream 476754 741832 ~ 743740 (+)
G203635 LOC108280870,LOC103034911 non-coding downstream 72195 1309397 ~ 1312989 (+)
G203647 NA non-coding downstream 125181 1362383 ~ 1441015 (+)
G203660 NA non-coding downstream 209787 1446989 ~ 1500793 (+)
G203662 NA non-coding downstream 285024 1522226 ~ 1533045 (+)
G203672 NA non-coding downstream 328154 1565356 ~ 1566629 (+)
armc5 armc5 other upstream 164160 1034336 ~ 1056334 (+)
setd1a setd1a,LOC107737760,LOC107554121,LOC107729457 other upstream 414149 778840 ~ 806345 (+)
fus fus,LOC107658502,LOC107729526 other upstream 446244 753067 ~ 774250 (+)
si:dkey-16l2.17 LOC108280473 other upstream 487604 726729 ~ 732890 (+)
thoc6 thoc6,LOC107580143,LOC108280484,LOC107730738,LOC107689651,LOC106600718 other upstream 496802 666808 ~ 723692 (+)
kmt5c LOC108280634 other downstream 116127 1353329 ~ 1361460 (+)
syt3 syt3,LOC107551154,LOC107563990,LOC107680842 other downstream 324322 1561524 ~ 1619974 (+)
ccndx LOC108280826 other downstream 645850 1883052 ~ 1889515 (+)
ppfia3 ppfia3,LOC107551161,LOC107687647,LOC107563979,LOC107732887,LOC107729434 other downstream 680003 1917205 ~ 1987915 (+)
rundc1 rundc1 other downstream 940481 2177683 ~ 2186164 (+)

Expression


Co-expression Network