si:ch211-51c14.1 (si:ch211-51c14.1,LOC108427330,LOC107732900,LOC107729493,LOC107551153,LOC108274951,LOC105012945)


Basic Information

Item Value
gene id si:ch211-51c14.1
gene name si:ch211-51c14.1,LOC108427330,LOC107732900,LOC107729493,LOC107551153,LOC108274951,LOC105012945
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 1504878 ~ 1531986 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026917182.2
GGAAGAGAGAACGAGCCACCTCATCAAACActgacagagaggagagagagagagtgtgtgagagagagagagagagagagagaaagagagagagaaggaggaggagagcgagagagcggtGAAGAAGGACACAGCAGGAGAACCAGAGGCTGAACTTTTGTGAAACTTTTTCACAAAGAAACCCAAAAGCTTGAGGACTCAGGATGTCGTCTGTCCATCAGGAGAACGGCCCAGAAGACGCCGGCCACCAGAGCTTCTGGATGcctggaAACTACCAGCGGACGGTGAAGAGGACGGAGGACGCCTTCCAGGCGTGTAATGACATCGTGACGTGTTTTCAGGAGCGGGCGCGGGTCGAGAGGCTTTACGCTCAGCAGCTCAATGAGTGGAGCAACAAGTGGAAGCCCCTAGTGGACACCAGTCCTCTCTATGGCTCTCTGTTACGGGCGTGGCAGTGTTTCCTCTCCTCCGCCGATCGGCTCTCCACCCTGCACTCCTCCATCTGCCGCTCCCTGGTCTCTGAGGAAGGAGACCGGATCAGGACGTGGCAGAAGGAGACCTTCCATAAGAAGATGTTTGGTGGCTTCAGGGAGTCGCAGGACTTTGAGACAGGATTCGCTCGCGCTCAGAAACCCTGGGCCAAGAGACTCAAGAAGCTGGAGAAGGCGAAGGCGGCGTTTCATAAAGCGTGTCGTAAGGAGCACATGGCTCGGGAACGGGAGGTTCACGCTCAGGGAAACCCCGACATCGCCATCGAGAAACAGAGGAAGATCCAGGACGAGCGAGAGAGCGCACAGCAGGAGACTCAGAAAGTGAGAGCCCGGTACGAGAAGGTTCTGGAGGAAGTGACACGTTATGCCCCGCGCTACATGGAGGAAATGGAATCTATCTTCGACCAAtcacaggaggaggagaggaagaggatcAGCTTCCTCAAGCAGGTCTTTTTGTCCATCCACAGACACCTCGATGTCACCAACAACGAGAGtGTGAAGGCTGTGTATAACGAGCTCCATGATGCTCTGATGGCCATTAATGAGCAGGAGGACCTGCGCTGGTGGAAGAACACACACGGCCCGGGgatgcccactgactggcctcAGTTCCAGGAATGGATACCAGACAAGAAGCttaaaaagggaaagaaagctTTGGAGCAGAAAGCGGTGGTGATGGAGAGAGGTGTAATGATTGGTGGAATTCGAGTCCGAGCTCTTTATGATTATGTTGGACAGGAGCCAGATGAGCTGTCCTTTAAaactggtgaGGAGTTCGTGAAGATCGAGGATGAGGATGATCAGGGTTGGTGTAGAGGGATGATGGATGGAGGCAAAGAAGGTCTTTATCCAGCAAACTATGTGGAGGTGGTGTAGGTCCAACAGCGCCACCTACCACTGtgatggaacacacacacacacacacacacacacacatacacacagtccaACACTGCTTTGAACATGCCCTTGTCAATGACATGACACGAGTGCGCTTACGAGACACAGCCACTTcctacatgattttttttacattttttgttttttttttactttgaagtacacacacagttattatcagtttgctagctagctaccaaGCATGctaattagccagctagctaattagcttaTCTAactatttaaaatgataaagattAATTTCGATCACAGGCAATAGACAATAGTTTATAACATGAAACCCAGAACGTAGAAAAACAAAGCCTAGTCTGTCTTTTTTATAAAACTGTGTCAGATTgcaatgccttctgggtaaCTTTTGCCTTTGAAGTCTACAGTCATGTGACACTGAACAAACATCTTGTGCAGAACTTCAACGGGCAAGTCGACAAGGTCGTGTTCAAAACAGTACTGAAACCCCGCCACACTCTGCCTCTTGGGTCCTGACTGCGTTCGGAGCTTCCCAAGTTCCTGCCagtccatctttttttttttttattttatttgtattattttttattttctgtgtaagCTCAAAAGTTTCTGCTGAGAGAGAAGGTGTGCAGGAAGCAGCTGAAGTGCTTGTGTACGTGTTTAGAGTTGCGAGAATAAGAAAAGTGCTTTTATGCAGCAGAAAATGTTGCTTTTATGTTCGGGTGTTTTGTTCGAGTCGGAGGAGTCGAAACAGGATCGAGGTGACATGAAGATACACGGTACAGTTCATACGCTAGCATGTAGAAGGTTTATGAAGGGAGATTATCACGCTGAATATCTGACCAGTCGATTTCATGAAGAATCGTGAAGCGCTACGTCCAGTCAGTGTCAGCTGACATAAAGACTACGTCAGGTTGACATAACACCTGAGTCAAGTGACATAGATTGTTCTTGACATAAAGTTATGACACTTTCCTGATTGATTTCTGTTGGAATGTCATGACAACTGACTTCGTAGCTCAGTCTACTCTACTCTGTCAGAATATGAAAGTTTTTATATCAGGGCTTATgcaggtgtcatgtagctctatGAACACTATCACGAAGTTTTAAGTCGTCATGATTTGTCCCATGAATATATACATCTGAGTATATGTTAAGCTTGATGAATTCTTTATGATCATCACTACACTAATCTAAAACGTTCACTTTGGctgaaatcaaagggaaaaagaCGTGCCCTTAATACCTTTAAACATCTTTGCCTTTCCTGGGATTGTACCGATCCCTTTAATGCATGATGCTATGCTAGCATACTGTACTTTCCTGATAATAATTTGCTCAAGATTTCACTTAACGAGTTATTGATAGACTAGTGTAACATCTGGAGGAGCACTTCAACCCTAAACACACGACCAAAcagaaattttacatttaagatGATACCCATACAGCATCATGTCATCATAACAAATGTCTAGCGCATGctagaaaacaaacagaaacatgttATCATGtgatctgggaaaaaaaaactgcatacaatacagtgccttgcataagtattcaccccccatgaacttttctatatttt

Function

symbol description
si:ch211-51c14.1 Predicted to enable phospholipid binding activity. Predicted to be involved in cytoskeleton organization; plasma membrane tubulation; and regulation of endocytosis. Predicted to be active in endosome and plasma membrane.

NR:

description
PREDICTED: protein kinase C and casein kinase substrate in neurons protein 3-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026917182.2 True 2985 mRNA 0.46 10 1504878 1531986

Neighbor

gene id symbol gene type direction distance location
shank1 shank1,LOC108427331,LOC107732841 coding upstream 10860 1401808 ~ 1494018 (+)
ppp1caa ppp1caa,LOC108280818,LOC105897688,LOC103034594,LOC103392690,LOC101477563,LOC103367324,LOC107378498 coding upstream 159841 1324100 ~ 1345037 (+)
coro1a LOC103035240,LOC108427335,LOC108280773,LOC107658445,LOC107729508 coding upstream 238757 1253527 ~ 1266121 (+)
LOC113528076 NA coding upstream 394740 1078439 ~ 1110138 (+)
LOC113528077 NA coding upstream 462428 1037151 ~ 1042450 (+)
med25 med25 coding downstream 99086 1631072 ~ 1658296 (+)
lrrc4ba lrrc4b,lrrc4ba,LOC103034410,LOC107667844,LOC107680881,LOC107551155,LOC107563987,LOC107732840 coding downstream 146326 1678312 ~ 1723798 (+)
emc10 emc10 coding downstream 284325 1816311 ~ 1826068 (+)
zgc:195001 LOC108274956 coding downstream 296685 1828671 ~ 1839338 (+)
tbc1d17 tbc1d17,LOC107551157,LOC107687627,LOC107729504,LOC107563983,LOC107680857 coding downstream 322756 1854742 ~ 1870170 (+)
G203660 NA non-coding upstream 4085 1446989 ~ 1500793 (+)
G203647 NA non-coding upstream 63863 1362383 ~ 1441015 (+)
G203635 LOC108280870,LOC103034911 non-coding upstream 191889 1309397 ~ 1312989 (+)
G203385 NA non-coding upstream 394031 1110529 ~ 1110847 (+)
LOC117598762 NA non-coding upstream 426452 1061190 ~ 1078426 (+)
G203672 NA non-coding downstream 33370 1565356 ~ 1566629 (+)
G203867 NA non-coding downstream 240643 1772629 ~ 1867011 (+)
G203885 NA non-coding downstream 292992 1824978 ~ 1825293 (+)
G203898 NA non-coding downstream 324437 1856423 ~ 1871560 (+)
G203906 NA non-coding downstream 373853 1905839 ~ 1922479 (+)
kmt5c LOC108280634 other upstream 143418 1353329 ~ 1361460 (+)
paqr4a paqr4,LOC101165805,LOC105897660,LOC104930707,LOC108280840,LOC107658445,LOC106606885,LOC102784286 other upstream 267676 1220494 ~ 1237202 (+)
armc5 armc5 other upstream 448544 1034336 ~ 1056334 (+)
setd1a setd1a,LOC107737760,LOC107554121,LOC107729457 other upstream 698533 778840 ~ 806345 (+)
fus fus,LOC107658502,LOC107729526 other upstream 730628 753067 ~ 774250 (+)
syt3 syt3,LOC107551154,LOC107563990,LOC107680842 other downstream 29538 1561524 ~ 1619974 (+)
ccndx LOC108280826 other downstream 351066 1883052 ~ 1889515 (+)
ppfia3 ppfia3,LOC107551161,LOC107687647,LOC107563979,LOC107732887,LOC107729434 other downstream 385219 1917205 ~ 1987915 (+)
rundc1 rundc1 other downstream 645697 2177683 ~ 2186164 (+)
LOC113528221 LOC108276032,LOC108276106 other downstream 1335782 2867768 ~ 2908043 (+)

Expression


Co-expression Network