G203867


Basic Information

Item Value
gene id G203867
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 1772629 ~ 1867011 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU241458
ctcctctgtcctgaagatgttggaaaaaagttacagcttcacctctgactgttacaaagctctgacactggagactccttccaacaaagttaaagaaataaacgtctccttactgaaaacatcactttttttccctgtggatgagccattactatagaaacgatagcgttTTAACGATTTACAGATGCAGTACATTGTAGAAAATGACTCGACAACTccggaccaatcagaatcgaggaCACTCGTGCTGTGAACACTGAAGattgaagaatttttttttttcaacaacaaATGATCAGTTTTAttcaaaacatttgtttaaacactgaacacatggTGTGAAATGTGCAAGACTGACGTTAACATCGtcgtatcatcatcatcatcatcatcatcactgtcgtCATCAGTCATAACACAGATGTTGCACTACACCGTTATCGTGTTAGCGCAAAAATTCACTTCAAAATCGCAGCATAGTGTCGATTTCTAAAGAACGTAGTGTTTATTAACCTCCACGAGCTCTTTCTGCTCTCCCTCGATATCAGCAGAGATATCAGTGTGTAAATTAGCTTCATACGGCATCAGCTACGGCCACGAACGCACCGCGCGCCGATTCTGTTAGTGTTGCTCACGTACGACAGCttgaaaggtcacatgaccaaaaGCAATGCGTGGACAATGAGACTGATCTGCTGACATCTGAAATCTAATTTAGTTTAGCGATTGAACTGCTAACAACGAAGCAAGCAAACATCCAGCTAGCATTACGCTAATGATCTTTTTGTTAAACTGTATTCACGGCTAGCAAGATTAGCATGTGATTTAGCTATCGATCAGAACAGGAACAGGTTAAAAGCAGCCATCGCTGACTGTTCGGTAGTTACCGGctctttctgatttttttttttttaatgatttttccGGAAAAATAACGATTTTCTTATTTCCAGAAGCACAAGTCGTCTCATGCTTACATCTACGAGAGACTAAAGATttccattttcaacaaatcagATCTCATCAGATCTCATCAATTCTCGAGATCGATGTCCTCCGCGTTAAGCTTGCTACGTTATGCAAAACATATTCAGGTACGAATTTTATCTCATCACTCGCGTTCACGTACAGAtcgaaaaaaaaatattaaatgccaAGTCCGATCCGCATTCCTTATACCCGAGTTCACAAGGACATTttaatggggggaaaaaaaaagaaaagaaaaaggtgtCGATATGCAGCACGGCTTTGTTGTGGGCGGAGACTGAtatttaagctccgcccccagacCATCTATGGTTATGAATATGTATGTTTTTCCCAAAATAAGGAGTGGGATGATATGTCAGAAAATATCACCCTGCGATGCTTGATGATTTAACGATAAAGATATAAGCAtgatgttatataaaaaaaaaatactttttaggaaaaaaaaaaacagaaaataaaatccaaaatatgGAGTTATTAAACCACCAAAAGATGCATAACGATACTAACAACACTTAGAAGAGTAACGATATAATGGTAATAACGTATCGCAATATCCATATTAAATTATCATATGATCACATCGCCGAGCTCTACGTCATTAACGTTTCCGAAACGCACACTGGAGTGGATTTTAACTCTAAAAACGTCCTTGTGAACgcagcttttcttttctttttttttttgagaactcCCCGCTGATCCAGGATCAACTCCTCTCCAAACACACAGCTACATTCAATTACAGCGTACAAAAGGCAAACACTGATCCTAGAACAGCTCGATACAGATCCATAACATCTCGAAACTCAAACTTGGTCTTTCCTACTGCCttgggaagaagaagaaaaaaaaaaaggaaggttAGTAAAGATTTTCGTCGCATTAAATGTTGAAATCTGTCTCAGAGTCTAAAAAATAACAGGTTCGGGTCGTATTTACATCCCAGTTCGTTTTCACACACGTCTCGTCTCACGTTATGTCTCTCAGAATtcgtttctcacacacacacacacacacacacgtccatcATCAGTGCTTGAGAGAGAAGTCGCCGGTGTTGAGTCGGGGTCGAGGCAGCGCTCCGAACATCTCTGTTCCATCGGTGGCTGCTGGAGCTAAAAGAGCCTTCATGCTGGCGGCGATGTGATCAAGATCCGCACAGCcgacctgcaacacacacacacacacacacacacacacacacacacacacacacacacac
>TU241459
aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggaaggttAGTAAAGATTTTCGTCGCATTAAATGTTGAAATCTGTCTCAGAGTCTAAAAAATAACAGGTTCGGGTCGTATTTACATCCCAGTTCGTTTTCACACACGTCTCGTCTCACGTTATGTCTCTCAGAATtcgtttctctcacacacacacacacacacacacacacacacacacacacacacgtccatcATCAGTGCTTGAGAGAGAAGTCGCCGGTGTTGAGTCGGGGTCGAGGCAGCGCTCCGAACATCTCTGTTCCATCGGTGGCTGCTGGAGCTAAAAGAGCCTTCATGCTGGCGGCGATGTGATCAAGATCCGcacactctctctcacacacacacacacacacacaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU241458 True 2221 lncRNA 0.40 2 1840338 1842580
TU241459 False 398 lncRNA 0.44 3 1772629 1867011

Neighbor

gene id symbol gene type direction distance location
lrrc4ba lrrc4b,lrrc4ba,LOC103034410,LOC107667844,LOC107680881,LOC107551155,LOC107563987,LOC107732840 coding upstream 48831 1678312 ~ 1723798 (+)
med25 med25 coding upstream 114333 1631072 ~ 1658296 (+)
si:ch211-51c14.1 si:ch211-51c14.1,LOC108427330,LOC107732900,LOC107729493,LOC107551153,LOC108274951,LOC105012945 coding upstream 240643 1504878 ~ 1531986 (+)
shank1 shank1,LOC108427331,LOC107732841 coding upstream 278611 1401808 ~ 1494018 (+)
ppp1caa ppp1caa,LOC108280818,LOC105897688,LOC103034594,LOC103392690,LOC101477563,LOC103367324,LOC107378498 coding upstream 427592 1324100 ~ 1345037 (+)
nucb1 nucb1,LOC108434929,LOC107729549,LOC107687629,LOC107563981,LOC107732899 coding downstream 23274 1890285 ~ 1903186 (+)
slc1a9 slc1a9,LOC108278773,LOC108434930,LOC107551162,LOC107680867,LOC107729473 coding downstream 145222 2012233 ~ 2061070 (+)
hsd17b14 hsd17b14,dhb14,LOC106606926 coding downstream 217541 2084552 ~ 2091453 (+)
bcat2 bcat2,LOC108278805,LOC108434932,LOC107680854,LOC107561362,LOC107687634,LOC105897681,LOC107729480 coding downstream 225548 2092559 ~ 2114069 (+)
grna NA coding downstream 263517 2130528 ~ 2174611 (+)
G203672 NA non-coding upstream 206000 1565356 ~ 1566629 (+)
G203662 NA non-coding upstream 239584 1522226 ~ 1533045 (+)
G203660 NA non-coding upstream 271836 1446989 ~ 1500793 (+)
G203647 NA non-coding upstream 331614 1362383 ~ 1441015 (+)
G203635 LOC108280870,LOC103034911 non-coding upstream 459640 1309397 ~ 1312989 (+)
G203906 NA non-coding downstream 38828 1905839 ~ 1922479 (+)
G203913 NA non-coding downstream 52012 1919023 ~ 1987215 (+)
G203935 NA non-coding downstream 141390 2008401 ~ 2008606 (+)
G203955 NA non-coding downstream 287425 2154436 ~ 2159283 (+)
G203965 NA non-coding downstream 331102 2198113 ~ 2198333 (+)
syt3 syt3,LOC107551154,LOC107563990,LOC107680842 other upstream 152655 1561524 ~ 1619974 (+)
kmt5c LOC108280634 other upstream 411169 1353329 ~ 1361460 (+)
paqr4a paqr4,LOC101165805,LOC105897660,LOC104930707,LOC108280840,LOC107658445,LOC106606885,LOC102784286 other upstream 535427 1220494 ~ 1237202 (+)
armc5 armc5 other upstream 716295 1034336 ~ 1056334 (+)
setd1a setd1a,LOC107737760,LOC107554121,LOC107729457 other upstream 966284 778840 ~ 806345 (+)
ccndx LOC108280826 other downstream 16041 1883052 ~ 1889515 (+)
ppfia3 ppfia3,LOC107551161,LOC107687647,LOC107563979,LOC107732887,LOC107729434 other downstream 50194 1917205 ~ 1987915 (+)
rundc1 rundc1 other downstream 310672 2177683 ~ 2186164 (+)
LOC113528221 LOC108276032,LOC108276106 other downstream 1000757 2867768 ~ 2908043 (+)
pyya LOC108276154,LOC108434917 other downstream 1136597 3003608 ~ 3012859 (+)

Expression


Co-expression Network