G203662


Basic Information

Item Value
gene id G203662
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 1522226 ~ 1533045 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU241224
aaaaaaaaaaaaaaaaaaaaaaaaaacaggcattttTTTTGGTTCACCCCCTGGAGAATATGTGGTAGAGATATCTTGGCTGCAATTCCAGCTGTATCCCtgtcagctttgcacatctggatcctgatatttttgcccattcttgtTCTTCTTGGCAAGATTGCTCGAGCTTTGGCAGATTTGGACAGAGACCATCATTGGTGAACAGCAGTTTTGGCACAAATTCTCAACTGGATTGAGGTTTGGGCTTTGACCGGACCGTTCTTTCACTTTCTTGCTTCCTGTTGCAAAGTGAAGCTCCGCCCCTCACACATCATCTGCATATGAAACAGGTTTGATTGTTCTGTACTTGCCTCTGTCCATCCtgccctcaaccctgaccagtttcccagttCCTGCTGATCAAAACCATCCCCACAacacgatgctaccaccaccacgcTTCACTGCAGGGTGATGAGAAGTGTGGCAATTCCACCAAATGTAGAACCTTGTGCCAAGGCCAAGGTTTGGTCTGATAAGACCTGAGAACTCCTTTCCACATGTTCCAACATCTCTTGACTCAAACGTTTTCCAAAGTTTTTTCCGTTTCAGTTCCAGGCTGTAACGCTACgaaatgtaatttcatttatgtttgtgtgtctgtgggaaagATTTAATGTAGCTGCCGTTTGAGCATTTCAGGAAGTGTTTCACACCAAAGAATCACAAACCAAAAAtgtattctttattaaaaaactctatcatttcaattttacatcttatatttttaGGCGTAAAGCAGTGCACTGTGTCCATACGACATCCTGCTGCTTTCGTTTCACCTCCTTTGAGTTTATCAGTGTTAAAGACTGTAAAATTTATGTAAGAgttatttttggttgttttttggCTTTATATATGCAAAGCGTCCTTTTAAAggatgatgtgtgtgagtgtgtacgtgtgtatcATGCTATATGCACCTTATTTACAGTAGCTATTcagtagaacacacacacacatggggaAG

Function

GO:

id name namespace
GO:0016310 phosphorylation biological_process

KEGG:

id description
ko00010 Glycolysis / Gluconeogenesis
ko00030 Pentose phosphate pathway
ko00710 Carbon fixation in photosynthetic organisms
ko00680 Methane metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
TU241224 True 1012 lncRNA 0.41 2 1522226 1533045

Neighbor

gene id symbol gene type direction distance location
shank1 shank1,LOC108427331,LOC107732841 coding upstream 28208 1401808 ~ 1494018 (+)
ppp1caa ppp1caa,LOC108280818,LOC105897688,LOC103034594,LOC103392690,LOC101477563,LOC103367324,LOC107378498 coding upstream 177189 1324100 ~ 1345037 (+)
coro1a LOC103035240,LOC108427335,LOC108280773,LOC107658445,LOC107729508 coding upstream 256105 1253527 ~ 1266121 (+)
LOC113528076 NA coding upstream 412088 1078439 ~ 1110138 (+)
LOC113528077 NA coding upstream 479776 1037151 ~ 1042450 (+)
med25 med25 coding downstream 98027 1631072 ~ 1658296 (+)
lrrc4ba lrrc4b,lrrc4ba,LOC103034410,LOC107667844,LOC107680881,LOC107551155,LOC107563987,LOC107732840 coding downstream 145267 1678312 ~ 1723798 (+)
emc10 emc10 coding downstream 283266 1816311 ~ 1826068 (+)
zgc:195001 LOC108274956 coding downstream 295626 1828671 ~ 1839338 (+)
tbc1d17 tbc1d17,LOC107551157,LOC107687627,LOC107729504,LOC107563983,LOC107680857 coding downstream 321697 1854742 ~ 1870170 (+)
G203660 NA non-coding upstream 21433 1446989 ~ 1500793 (+)
G203647 NA non-coding upstream 81211 1362383 ~ 1441015 (+)
G203635 LOC108280870,LOC103034911 non-coding upstream 209237 1309397 ~ 1312989 (+)
G203385 NA non-coding upstream 411379 1110529 ~ 1110847 (+)
LOC117598762 NA non-coding upstream 443800 1061190 ~ 1078426 (+)
G203672 NA non-coding downstream 32311 1565356 ~ 1566629 (+)
G203867 NA non-coding downstream 239584 1772629 ~ 1867011 (+)
G203885 NA non-coding downstream 291933 1824978 ~ 1825293 (+)
G203898 NA non-coding downstream 323378 1856423 ~ 1871560 (+)
G203906 NA non-coding downstream 372794 1905839 ~ 1922479 (+)
kmt5c LOC108280634 other upstream 160766 1353329 ~ 1361460 (+)
paqr4a paqr4,LOC101165805,LOC105897660,LOC104930707,LOC108280840,LOC107658445,LOC106606885,LOC102784286 other upstream 285024 1220494 ~ 1237202 (+)
armc5 armc5 other upstream 465892 1034336 ~ 1056334 (+)
setd1a setd1a,LOC107737760,LOC107554121,LOC107729457 other upstream 715881 778840 ~ 806345 (+)
fus fus,LOC107658502,LOC107729526 other upstream 747976 753067 ~ 774250 (+)
syt3 syt3,LOC107551154,LOC107563990,LOC107680842 other downstream 28479 1561524 ~ 1619974 (+)
ccndx LOC108280826 other downstream 350007 1883052 ~ 1889515 (+)
ppfia3 ppfia3,LOC107551161,LOC107687647,LOC107563979,LOC107732887,LOC107729434 other downstream 384160 1917205 ~ 1987915 (+)
rundc1 rundc1 other downstream 644638 2177683 ~ 2186164 (+)
LOC113528221 LOC108276032,LOC108276106 other downstream 1334723 2867768 ~ 2908043 (+)

Expression


Co-expression Network